Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_389 and Pf6N2E2_390 are separated by 58 nucleotides Pf6N2E2_390 and Pf6N2E2_391 are separated by 48 nucleotides Pf6N2E2_391 and Pf6N2E2_392 are separated by 21 nucleotides
Pf6N2E2_389 - Choline dehydrogenase (EC 1.1.99.1), at 456,997 to 458,562
_389
Pf6N2E2_390 - hypothetical protein, at 458,621 to 459,394
_390
Pf6N2E2_391 - hypothetical protein, at 459,443 to 460,921
_391
Pf6N2E2_392 - Transcriptional regulator, at 460,943 to 461,851
_392
Position (kb) 459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 458.538 kb on - strand at 458.538 kb on - strand at 458.794 kb on - strand, within Pf6N2E2_390 at 458.794 kb on - strand, within Pf6N2E2_390 at 458.794 kb on - strand, within Pf6N2E2_390 at 458.943 kb on + strand, within Pf6N2E2_390 at 458.944 kb on - strand, within Pf6N2E2_390 at 459.054 kb on + strand, within Pf6N2E2_390 at 459.054 kb on + strand, within Pf6N2E2_390 at 459.054 kb on + strand, within Pf6N2E2_390 at 459.055 kb on - strand, within Pf6N2E2_390 at 459.288 kb on - strand, within Pf6N2E2_390 at 459.288 kb on - strand, within Pf6N2E2_390 at 459.310 kb on + strand, within Pf6N2E2_390 at 459.310 kb on + strand, within Pf6N2E2_390 at 459.310 kb on + strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.311 kb on - strand, within Pf6N2E2_390 at 459.459 kb on + strand at 459.899 kb on + strand, within Pf6N2E2_391 at 459.899 kb on + strand, within Pf6N2E2_391 at 459.900 kb on - strand, within Pf6N2E2_391 at 459.900 kb on - strand, within Pf6N2E2_391 at 460.310 kb on + strand, within Pf6N2E2_391 at 460.310 kb on + strand, within Pf6N2E2_391 at 460.473 kb on - strand, within Pf6N2E2_391 at 460.668 kb on + strand, within Pf6N2E2_391 at 460.669 kb on - strand, within Pf6N2E2_391 at 460.783 kb on + strand at 460.848 kb on + strand at 460.848 kb on + strand at 460.848 kb on + strand at 460.849 kb on - strand at 460.849 kb on - strand at 460.849 kb on - strand at 461.022 kb on + strand at 461.023 kb on - strand at 461.025 kb on + strand at 461.026 kb on - strand at 461.026 kb on - strand at 461.026 kb on - strand at 461.308 kb on + strand, within Pf6N2E2_392 at 461.313 kb on + strand, within Pf6N2E2_392 at 461.313 kb on + strand, within Pf6N2E2_392 at 461.314 kb on - strand, within Pf6N2E2_392 at 461.314 kb on - strand, within Pf6N2E2_392 at 461.326 kb on - strand, within Pf6N2E2_392 at 461.326 kb on - strand, within Pf6N2E2_392 at 461.350 kb on - strand, within Pf6N2E2_392 at 461.383 kb on + strand, within Pf6N2E2_392 at 461.394 kb on - strand, within Pf6N2E2_392 at 461.477 kb on + strand, within Pf6N2E2_392 at 461.478 kb on - strand, within Pf6N2E2_392 at 461.677 kb on + strand, within Pf6N2E2_392 at 461.686 kb on + strand, within Pf6N2E2_392 at 461.834 kb on + strand at 461.842 kb on + strand at 461.842 kb on + strand at 461.916 kb on + strand at 461.917 kb on - strand at 461.917 kb on - strand at 461.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 458,538 - +0.9 458,538 - +0.9 458,794 - Pf6N2E2_390 0.22 -2.2 458,794 - Pf6N2E2_390 0.22 +0.9 458,794 - Pf6N2E2_390 0.22 -2.0 458,943 + Pf6N2E2_390 0.42 -1.4 458,944 - Pf6N2E2_390 0.42 +0.9 459,054 + Pf6N2E2_390 0.56 +0.9 459,054 + Pf6N2E2_390 0.56 -1.4 459,054 + Pf6N2E2_390 0.56 +0.9 459,055 - Pf6N2E2_390 0.56 -1.4 459,288 - Pf6N2E2_390 0.86 -0.1 459,288 - Pf6N2E2_390 0.86 -0.1 459,310 + Pf6N2E2_390 0.89 -0.1 459,310 + Pf6N2E2_390 0.89 -1.7 459,310 + Pf6N2E2_390 0.89 +0.9 459,311 - Pf6N2E2_390 0.89 -0.1 459,311 - Pf6N2E2_390 0.89 -0.1 459,311 - Pf6N2E2_390 0.89 -0.7 459,311 - Pf6N2E2_390 0.89 +0.9 459,311 - Pf6N2E2_390 0.89 -0.1 459,459 + -0.1 459,899 + Pf6N2E2_391 0.31 -0.7 459,899 + Pf6N2E2_391 0.31 +0.9 459,900 - Pf6N2E2_391 0.31 -1.4 459,900 - Pf6N2E2_391 0.31 -1.4 460,310 + Pf6N2E2_391 0.59 -0.7 460,310 + Pf6N2E2_391 0.59 -0.1 460,473 - Pf6N2E2_391 0.70 -1.7 460,668 + Pf6N2E2_391 0.83 -0.1 460,669 - Pf6N2E2_391 0.83 -2.2 460,783 + +0.9 460,848 + -0.1 460,848 + -0.1 460,848 + -0.1 460,849 - +0.9 460,849 - +0.9 460,849 - +0.9 461,022 + -0.1 461,023 - -1.5 461,025 + -1.3 461,026 - -1.4 461,026 - -2.2 461,026 - +0.9 461,308 + Pf6N2E2_392 0.40 +0.9 461,313 + Pf6N2E2_392 0.41 +0.9 461,313 + Pf6N2E2_392 0.41 +0.9 461,314 - Pf6N2E2_392 0.41 -1.4 461,314 - Pf6N2E2_392 0.41 -0.1 461,326 - Pf6N2E2_392 0.42 -0.1 461,326 - Pf6N2E2_392 0.42 -2.5 461,350 - Pf6N2E2_392 0.45 -1.7 461,383 + Pf6N2E2_392 0.48 -0.9 461,394 - Pf6N2E2_392 0.50 -0.1 461,477 + Pf6N2E2_392 0.59 -2.9 461,478 - Pf6N2E2_392 0.59 -1.2 461,677 + Pf6N2E2_392 0.81 -0.1 461,686 + Pf6N2E2_392 0.82 +0.9 461,834 + -1.1 461,842 + -0.1 461,842 + +0.9 461,916 + +0.9 461,917 - +0.9 461,917 - -0.1 461,917 - +0.9
Or see this region's nucleotide sequence