Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3816

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
4,448,242	+		Pf6N2E2_3815	0.80	+0.2
4,448,242	+		Pf6N2E2_3815	0.80	-1.6
4,448,242	+		Pf6N2E2_3815	0.80	-1.6
4,448,242	+		Pf6N2E2_3815	0.80	+0.2
4,448,242	+		Pf6N2E2_3815	0.80	-0.6
4,448,242	+		Pf6N2E2_3815	0.80	-2.6
4,448,242	+		Pf6N2E2_3815	0.80	-1.2
4,448,242	+		Pf6N2E2_3815	0.80	+0.2
4,448,242	+		Pf6N2E2_3815	0.80	-1.4
4,448,242	+		Pf6N2E2_3815	0.80	+1.2
4,448,242	+		Pf6N2E2_3815	0.80	+1.2
4,448,243	-		Pf6N2E2_3815	0.80	-0.5
4,448,243	-		Pf6N2E2_3815	0.80	-1.2
4,448,243	-		Pf6N2E2_3815	0.80	+0.2
4,448,243	-		Pf6N2E2_3815	0.80	-1.1
4,448,243	-		Pf6N2E2_3815	0.80	-1.3
4,448,349	+		Pf6N2E2_3815	0.83	-0.3
4,448,350	-		Pf6N2E2_3815	0.83	-0.4
4,448,403	-		Pf6N2E2_3815	0.85	-1.5
4,448,631	-				-1.1
4,448,631	-				-2.2
4,449,090	+				+0.2
4,449,090	+				+1.2
4,449,157	+				-1.8
4,449,158	-				+1.2
4,449,161	+				+0.6
4,449,162	-				+1.2
4,449,162	-				+1.2
4,449,162	-				-2.2
4,449,182	+				+0.2
4,449,182	+				+1.2
4,449,182	+				-1.7
4,449,182	+				-1.2
4,449,182	+				+1.2
4,449,182	+				-0.8
4,449,182	+				-2.2
4,449,183	-				+0.2
4,449,183	-				-1.4
4,449,183	-				-0.3
4,449,183	-				+0.2
4,449,185	+				-1.1
4,449,185	+				-0.8
4,449,185	+				+1.2
4,449,185	+				+1.2
4,449,186	-				-1.2
4,449,186	-				+0.2
4,449,186	-				-1.1
4,449,186	-				-0.4
4,449,186	-				-0.8
4,449,186	-				+1.2
4,449,273	-				-1.2
4,449,393	-				-1.9
4,449,393	-				-3.3
4,449,428	+				+1.2
4,449,429	-				+1.2
4,449,429	-				+0.2
4,449,791	+		Pf6N2E2_3816	0.22	-1.2
4,449,791	+		Pf6N2E2_3816	0.22	+0.2
4,449,791	+		Pf6N2E2_3816	0.22	-0.8
4,449,791	+		Pf6N2E2_3816	0.22	-2.9
4,449,792	-		Pf6N2E2_3816	0.22	+1.2
4,449,792	-		Pf6N2E2_3816	0.22	+0.2
4,449,792	-		Pf6N2E2_3816	0.22	+0.2
4,449,792	-		Pf6N2E2_3816	0.22	+1.2
4,449,896	+		Pf6N2E2_3816	0.27	+1.2
4,449,897	-		Pf6N2E2_3816	0.27	+1.2
4,449,897	-		Pf6N2E2_3816	0.27	+0.2
4,449,974	+		Pf6N2E2_3816	0.30	+1.2
4,449,974	+		Pf6N2E2_3816	0.30	-0.4
4,450,016	+		Pf6N2E2_3816	0.32	+1.2
4,450,016	+				+1.2
4,450,017	-		Pf6N2E2_3816	0.32	+0.2
4,450,017	-		Pf6N2E2_3816	0.32	-0.5
4,450,094	+		Pf6N2E2_3816	0.35	-1.6
4,450,095	-		Pf6N2E2_3816	0.35	-2.9
4,450,095	-		Pf6N2E2_3816	0.35	+0.2
4,450,359	+		Pf6N2E2_3816	0.46	-2.1
4,450,359	+		Pf6N2E2_3816	0.46	+1.2
4,450,526	+		Pf6N2E2_3816	0.52	+0.2
4,450,527	-		Pf6N2E2_3816	0.52	+1.2
4,450,527	-		Pf6N2E2_3816	0.52	-2.6
4,450,527	-		Pf6N2E2_3816	0.52	+0.2
4,450,527	-		Pf6N2E2_3816	0.52	-2.1
4,450,616	+		Pf6N2E2_3816	0.56	-2.8
4,450,617	-		Pf6N2E2_3816	0.56	-0.8
4,450,667	+		Pf6N2E2_3816	0.58	+1.2
4,450,668	-		Pf6N2E2_3816	0.58	-2.3
4,450,668	-		Pf6N2E2_3816	0.58	-0.4
4,450,823	+		Pf6N2E2_3816	0.65	-1.5
4,450,824	-		Pf6N2E2_3816	0.65	-3.2
4,450,890	+		Pf6N2E2_3816	0.67	+1.2
4,450,890	+		Pf6N2E2_3816	0.67	+1.2
4,450,890	+		Pf6N2E2_3816	0.67	+1.2
4,450,891	-		Pf6N2E2_3816	0.67	+0.2
4,451,037	-		Pf6N2E2_3816	0.73	-1.6
4,451,037	-		Pf6N2E2_3816	0.73	+1.2
4,451,135	+		Pf6N2E2_3816	0.77	-1.8
4,451,441	+		Pf6N2E2_3816	0.90	+1.2
4,451,441	+		Pf6N2E2_3816	0.90	-2.2
4,451,477	+				+1.2
4,451,477	+				+1.2
4,451,477	+				+0.2
4,451,477	+				+0.2
4,451,477	+				-0.8
4,451,478	-				-3.9
4,451,478	-				-0.4
4,451,478	-				-0.4
4,451,478	-				+1.2
4,451,478	-				-2.8
4,451,478	-				-1.7
4,451,478	-				+1.2
4,451,480	+				+1.2
4,451,480	+				+0.2
4,451,480	+				+1.2
4,451,481	-				+0.2
4,451,504	+				+1.2
4,451,505	-				-0.8
4,451,618	+				+0.2
4,451,618	+				+0.2
4,451,618	+				-2.6
4,451,619	-				+0.2
4,451,695	+				-1.2
4,451,696	-				-2.1
4,451,696	-				-0.8
4,451,696	-				+1.2
4,451,749	-				+1.2
4,451,908	+				+0.2
4,451,908	+				-0.8
4,451,936	+				+0.2
4,451,936	+				+1.2
4,451,937	-				-1.3
4,451,993	-		Pf6N2E2_3817	0.11	+0.2
4,451,993	-		Pf6N2E2_3817	0.11	+0.2
4,452,005	+		Pf6N2E2_3817	0.14	+0.2
4,452,005	+		Pf6N2E2_3817	0.14	+1.2
4,452,006	-		Pf6N2E2_3817	0.14	+1.2
4,452,006	-		Pf6N2E2_3817	0.14	-0.4
4,452,006	-		Pf6N2E2_3817	0.14	-2.0
4,452,170	+		Pf6N2E2_3817	0.51	-0.4
4,452,171	-		Pf6N2E2_3817	0.52	+0.2
4,452,227	+		Pf6N2E2_3817	0.64	+1.2
4,452,228	-		Pf6N2E2_3817	0.65	+1.2
4,452,228	-		Pf6N2E2_3817	0.65	-1.9
4,452,260	+		Pf6N2E2_3817	0.72	+0.2
4,452,260	+		Pf6N2E2_3817	0.72	-1.8
4,452,260	+		Pf6N2E2_3817	0.72	+0.2
4,452,261	-		Pf6N2E2_3817	0.72	-0.4
4,452,317	+		Pf6N2E2_3817	0.85	+1.2
4,452,318	-		Pf6N2E2_3817	0.85	+1.2
4,452,326	+		Pf6N2E2_3817	0.87	-0.4
4,452,326	+		Pf6N2E2_3817	0.87	-2.1
4,452,327	-		Pf6N2E2_3817	0.87	+1.2
4,452,327	-		Pf6N2E2_3817	0.87	+0.2
4,452,373	+				+1.2
4,452,374	-				+1.2
4,452,386	-				+0.2
4,452,391	+				+0.2
4,452,391	+				-0.8
4,452,391	+				-0.2
4,452,392	-				+1.2
4,452,392	-				-0.4
4,452,459	+				-0.4
4,452,459	+				+1.2
4,452,460	-				+2.7
4,452,460	-				+1.2
4,452,491	+				+1.2
4,452,492	-				+1.2
4,452,492	-				+1.2
4,452,512	+				+1.2
4,452,519	+				+1.2
4,452,519	+				+1.2
4,452,519	+				+0.2
4,452,519	+				+1.2
4,452,520	-				-0.8
4,452,520	-				-1.2
4,452,520	-				-0.4
4,452,520	-				-1.5
4,452,520	-				-0.2
4,452,523	+				+0.2
4,452,523	+				+1.2
4,452,523	+				+1.2
4,452,523	+				+0.2
4,452,523	+				-1.5
4,452,524	-				+1.2
4,452,524	-				+1.2
4,452,524	-				+0.2
4,452,524	-				-1.2
4,452,524	-				+0.2
4,452,524	-				-3.3
4,452,524	-				+1.2