Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_35

Experiment: Ying_sugar7 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_34 and Pf6N2E2_35 are separated by 12 nucleotidesPf6N2E2_35 and Pf6N2E2_36 are separated by 186 nucleotides Pf6N2E2_34 - Cytosine deaminase (EC 3.5.4.1), at 73,056 to 74,303 _34 Pf6N2E2_35 - Cytosine permease, at 74,316 to 75,587 _35 Pf6N2E2_36 - Possible oxidoreductase, at 75,774 to 76,604 _36 Position (kb) 74 75 76Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 73.340 kb on + strand, within Pf6N2E2_34at 73.458 kb on - strand, within Pf6N2E2_34at 73.549 kb on + strand, within Pf6N2E2_34at 73.550 kb on - strand, within Pf6N2E2_34at 73.561 kb on + strand, within Pf6N2E2_34at 73.562 kb on - strand, within Pf6N2E2_34at 73.756 kb on + strand, within Pf6N2E2_34at 73.756 kb on + strand, within Pf6N2E2_34at 74.317 kb on + strandat 74.317 kb on + strandat 74.359 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.371 kb on - strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.377 kb on + strandat 74.378 kb on - strandat 74.378 kb on - strandat 74.378 kb on - strandat 74.378 kb on - strandat 74.593 kb on + strand, within Pf6N2E2_35at 74.594 kb on - strand, within Pf6N2E2_35at 74.612 kb on - strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.716 kb on + strand, within Pf6N2E2_35at 74.717 kb on - strand, within Pf6N2E2_35at 74.717 kb on - strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.821 kb on + strand, within Pf6N2E2_35at 74.822 kb on - strand, within Pf6N2E2_35at 75.107 kb on - strand, within Pf6N2E2_35at 75.107 kb on - strand, within Pf6N2E2_35at 75.139 kb on + strand, within Pf6N2E2_35at 75.140 kb on - strand, within Pf6N2E2_35at 75.140 kb on - strand, within Pf6N2E2_35at 75.211 kb on + strand, within Pf6N2E2_35at 75.211 kb on + strand, within Pf6N2E2_35at 75.211 kb on + strand, within Pf6N2E2_35at 75.212 kb on - strand, within Pf6N2E2_35at 75.212 kb on - strand, within Pf6N2E2_35at 75.253 kb on + strand, within Pf6N2E2_35at 75.362 kb on + strand, within Pf6N2E2_35at 75.365 kb on - strand, within Pf6N2E2_35at 75.365 kb on - strand, within Pf6N2E2_35at 75.382 kb on + strand, within Pf6N2E2_35at 75.382 kb on + strand, within Pf6N2E2_35at 75.560 kb on - strandat 75.560 kb on - strandat 75.560 kb on - strandat 75.612 kb on + strandat 75.612 kb on + strandat 75.612 kb on + strandat 75.612 kb on + strandat 75.612 kb on + strandat 75.612 kb on + strandat 75.612 kb on + strandat 75.613 kb on - strandat 75.613 kb on - strandat 75.613 kb on - strandat 75.613 kb on - strandat 75.659 kb on + strandat 75.660 kb on - strandat 75.660 kb on - strandat 75.660 kb on - strandat 75.660 kb on - strandat 75.663 kb on + strandat 75.663 kb on + strandat 76.003 kb on + strand, within Pf6N2E2_36at 76.003 kb on + strand, within Pf6N2E2_36at 76.003 kb on + strand, within Pf6N2E2_36at 76.075 kb on + strand, within Pf6N2E2_36at 76.076 kb on - strand, within Pf6N2E2_36at 76.076 kb on - strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.153 kb on + strand, within Pf6N2E2_36at 76.153 kb on + strand, within Pf6N2E2_36at 76.153 kb on + strand, within Pf6N2E2_36at 76.154 kb on - strand, within Pf6N2E2_36at 76.154 kb on - strand, within Pf6N2E2_36at 76.154 kb on - strand, within Pf6N2E2_36at 76.272 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.489 kb on + strand, within Pf6N2E2_36at 76.489 kb on + strand, within Pf6N2E2_36at 76.489 kb on + strand, within Pf6N2E2_36at 76.490 kb on - strand, within Pf6N2E2_36at 76.490 kb on - strand, within Pf6N2E2_36at 76.576 kb on + strandat 76.577 kb on - strandat 76.577 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
remove
73,340 + Pf6N2E2_34 0.23 +1.0
73,458 - Pf6N2E2_34 0.32 +1.0
73,549 + Pf6N2E2_34 0.40 +1.0
73,550 - Pf6N2E2_34 0.40 -0.9
73,561 + Pf6N2E2_34 0.40 +1.0
73,562 - Pf6N2E2_34 0.41 +1.0
73,756 + Pf6N2E2_34 0.56 +1.0
73,756 + Pf6N2E2_34 0.56 -1.0
74,317 + -0.6
74,317 + +1.0
74,359 - -1.0
74,371 - -0.8
74,371 - -0.6
74,371 - -4.3
74,371 - +1.0
74,371 - +1.0
74,377 + +1.0
74,377 + -1.0
74,377 + +1.0
74,377 + -1.8
74,377 + -0.0
74,377 + -1.7
74,378 - -0.0
74,378 - -1.1
74,378 - +1.0
74,378 - +1.0
74,593 + Pf6N2E2_35 0.22 -2.0
74,594 - Pf6N2E2_35 0.22 -0.0
74,612 - Pf6N2E2_35 0.23 -1.4
74,716 + Pf6N2E2_35 0.31 -0.0
74,716 + Pf6N2E2_35 0.31 +1.0
74,716 + Pf6N2E2_35 0.31 -0.0
74,716 + Pf6N2E2_35 0.31 -0.0
74,716 + Pf6N2E2_35 0.31 +1.0
74,717 - Pf6N2E2_35 0.32 +1.0
74,717 - Pf6N2E2_35 0.32 -1.7
74,821 + Pf6N2E2_35 0.40 -1.0
74,821 + Pf6N2E2_35 0.40 +0.4
74,821 + Pf6N2E2_35 0.40 +1.0
74,821 + Pf6N2E2_35 0.40 +1.0
74,821 + Pf6N2E2_35 0.40 +1.0
74,822 - Pf6N2E2_35 0.40 +1.0
75,107 - Pf6N2E2_35 0.62 +1.0
75,107 - Pf6N2E2_35 0.62 -0.6
75,139 + Pf6N2E2_35 0.65 +1.0
75,140 - Pf6N2E2_35 0.65 -0.6
75,140 - Pf6N2E2_35 0.65 +1.0
75,211 + Pf6N2E2_35 0.70 +1.0
75,211 + Pf6N2E2_35 0.70 +0.4
75,211 + Pf6N2E2_35 0.70 -2.2
75,212 - Pf6N2E2_35 0.70 -1.4
75,212 - Pf6N2E2_35 0.70 -0.0
75,253 + Pf6N2E2_35 0.74 +1.0
75,362 + Pf6N2E2_35 0.82 -0.0
75,365 - Pf6N2E2_35 0.82 +1.0
75,365 - Pf6N2E2_35 0.82 +1.0
75,382 + Pf6N2E2_35 0.84 -0.0
75,382 + Pf6N2E2_35 0.84 -0.6
75,560 - -1.0
75,560 - +1.0
75,560 - -2.1
75,612 + -0.0
75,612 + -2.7
75,612 + -1.6
75,612 + -0.0
75,612 + -1.8
75,612 + -0.0
75,612 + -1.4
75,613 - +1.0
75,613 - -1.7
75,613 - -1.9
75,613 - +1.0
75,659 + +1.0
75,660 - +1.0
75,660 - +1.0
75,660 - +1.0
75,660 - -0.6
75,663 + -2.8
75,663 + -0.6
76,003 + Pf6N2E2_36 0.28 +1.0
76,003 + Pf6N2E2_36 0.28 +1.0
76,003 + Pf6N2E2_36 0.28 -2.2
76,075 + Pf6N2E2_36 0.36 -0.0
76,076 - Pf6N2E2_36 0.36 +1.0
76,076 - Pf6N2E2_36 0.36 +1.0
76,126 + Pf6N2E2_36 0.42 +1.0
76,126 + Pf6N2E2_36 0.42 +1.0
76,126 + Pf6N2E2_36 0.42 -0.6
76,126 + Pf6N2E2_36 0.42 -0.0
76,126 + Pf6N2E2_36 0.42 -0.0
76,126 + Pf6N2E2_36 0.42 -1.0
76,126 + Pf6N2E2_36 0.42 -1.7
76,127 - Pf6N2E2_36 0.42 +1.0
76,127 - Pf6N2E2_36 0.42 -0.0
76,127 - Pf6N2E2_36 0.42 +1.0
76,127 - Pf6N2E2_36 0.42 -0.0
76,127 - Pf6N2E2_36 0.42 +1.0
76,127 - Pf6N2E2_36 0.42 -1.8
76,127 - Pf6N2E2_36 0.42 +1.0
76,127 - Pf6N2E2_36 0.42 +1.0
76,153 + Pf6N2E2_36 0.46 -0.0
76,153 + Pf6N2E2_36 0.46 +1.0
76,153 + Pf6N2E2_36 0.46 -0.6
76,154 - Pf6N2E2_36 0.46 -2.4
76,154 - Pf6N2E2_36 0.46 -0.9
76,154 - Pf6N2E2_36 0.46 -0.0
76,272 + Pf6N2E2_36 0.60 +1.0
76,438 + Pf6N2E2_36 0.80 +1.0
76,438 + Pf6N2E2_36 0.80 -1.8
76,438 + Pf6N2E2_36 0.80 -2.9
76,438 + Pf6N2E2_36 0.80 -2.6
76,438 + Pf6N2E2_36 0.80 +1.0
76,438 + Pf6N2E2_36 0.80 +1.0
76,438 + Pf6N2E2_36 0.80 -1.4
76,438 + Pf6N2E2_36 0.80 -0.0
76,439 - Pf6N2E2_36 0.80 -0.0
76,439 - Pf6N2E2_36 0.80 +1.0
76,439 - Pf6N2E2_36 0.80 -0.0
76,439 - Pf6N2E2_36 0.80 -0.6
76,439 - Pf6N2E2_36 0.80 +1.0
76,439 - Pf6N2E2_36 0.80 -0.0
76,439 - Pf6N2E2_36 0.80 -1.5
76,439 - Pf6N2E2_36 0.80 -0.0
76,489 + Pf6N2E2_36 0.86 -1.4
76,489 + Pf6N2E2_36 0.86 +1.0
76,489 + Pf6N2E2_36 0.86 +1.0
76,490 - Pf6N2E2_36 0.86 +1.0
76,490 - Pf6N2E2_36 0.86 +1.0
76,576 + -1.8
76,577 - +1.0
76,577 - +1.0

Or see this region's nucleotide sequence