Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_343 and Pf6N2E2_344 are separated by 4 nucleotides Pf6N2E2_344 and Pf6N2E2_345 are separated by 153 nucleotides
Pf6N2E2_343 - VacJ-like lipoprotein precursor, at 410,495 to 411,226
_343
Pf6N2E2_344 - hypothetical protein, at 411,231 to 411,455
_344
Pf6N2E2_345 - Manganese transport protein MntH, at 411,609 to 412,910
_345
Position (kb) 411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 410.404 kb on - strand at 410.437 kb on + strand at 410.490 kb on + strand at 410.490 kb on + strand at 410.491 kb on - strand at 410.491 kb on - strand at 410.491 kb on - strand at 410.561 kb on + strand at 410.561 kb on + strand at 410.561 kb on + strand at 410.562 kb on - strand at 410.562 kb on - strand at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.630 kb on + strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.631 kb on - strand, within Pf6N2E2_343 at 410.734 kb on - strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.745 kb on + strand, within Pf6N2E2_343 at 410.746 kb on - strand, within Pf6N2E2_343 at 410.746 kb on - strand, within Pf6N2E2_343 at 410.746 kb on - strand, within Pf6N2E2_343 at 410.858 kb on - strand, within Pf6N2E2_343 at 411.104 kb on + strand, within Pf6N2E2_343 at 411.105 kb on - strand at 411.105 kb on - strand, within Pf6N2E2_343 at 411.105 kb on - strand, within Pf6N2E2_343 at 411.107 kb on + strand, within Pf6N2E2_343 at 411.340 kb on - strand, within Pf6N2E2_344 at 411.340 kb on - strand, within Pf6N2E2_344 at 411.351 kb on + strand, within Pf6N2E2_344 at 411.352 kb on - strand, within Pf6N2E2_344 at 411.352 kb on - strand, within Pf6N2E2_344 at 411.483 kb on + strand at 411.484 kb on - strand at 411.518 kb on + strand at 411.518 kb on + strand at 411.762 kb on + strand, within Pf6N2E2_345 at 411.810 kb on + strand, within Pf6N2E2_345 at 411.810 kb on + strand, within Pf6N2E2_345 at 411.879 kb on + strand, within Pf6N2E2_345 at 411.879 kb on + strand, within Pf6N2E2_345 at 411.879 kb on + strand, within Pf6N2E2_345 at 411.880 kb on - strand, within Pf6N2E2_345 at 411.921 kb on + strand, within Pf6N2E2_345 at 411.921 kb on + strand, within Pf6N2E2_345 at 411.921 kb on + strand, within Pf6N2E2_345 at 411.954 kb on + strand, within Pf6N2E2_345 at 411.954 kb on + strand, within Pf6N2E2_345 at 411.954 kb on + strand, within Pf6N2E2_345 at 411.954 kb on + strand, within Pf6N2E2_345 at 411.954 kb on + strand, within Pf6N2E2_345 at 411.955 kb on - strand, within Pf6N2E2_345 at 411.955 kb on - strand, within Pf6N2E2_345 at 411.955 kb on - strand, within Pf6N2E2_345 at 411.955 kb on - strand, within Pf6N2E2_345 at 412.065 kb on - strand, within Pf6N2E2_345 at 412.068 kb on + strand, within Pf6N2E2_345 at 412.068 kb on + strand, within Pf6N2E2_345 at 412.068 kb on + strand, within Pf6N2E2_345 at 412.284 kb on + strand, within Pf6N2E2_345 at 412.284 kb on + strand, within Pf6N2E2_345 at 412.328 kb on + strand, within Pf6N2E2_345 at 412.329 kb on - strand, within Pf6N2E2_345
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 410,404 - +0.9 410,437 + +0.9 410,490 + +0.9 410,490 + +0.9 410,491 - -1.1 410,491 - -0.1 410,491 - +0.9 410,561 + +0.9 410,561 + -0.1 410,561 + -1.3 410,562 - -0.7 410,562 - -0.1 410,630 + Pf6N2E2_343 0.18 -1.1 410,630 + Pf6N2E2_343 0.18 -1.4 410,630 + Pf6N2E2_343 0.18 +0.9 410,630 + Pf6N2E2_343 0.18 +0.9 410,630 + Pf6N2E2_343 0.18 -1.9 410,630 + Pf6N2E2_343 0.18 -0.1 410,631 - Pf6N2E2_343 0.19 -2.5 410,631 - Pf6N2E2_343 0.19 +0.9 410,631 - Pf6N2E2_343 0.19 +0.9 410,631 - Pf6N2E2_343 0.19 +0.9 410,631 - Pf6N2E2_343 0.19 +0.9 410,631 - Pf6N2E2_343 0.19 +0.9 410,631 - Pf6N2E2_343 0.19 -0.1 410,734 - Pf6N2E2_343 0.33 +0.9 410,745 + Pf6N2E2_343 0.34 -0.1 410,745 + Pf6N2E2_343 0.34 -1.6 410,745 + Pf6N2E2_343 0.34 -0.1 410,745 + Pf6N2E2_343 0.34 -0.1 410,746 - Pf6N2E2_343 0.34 +0.9 410,746 - Pf6N2E2_343 0.34 -2.0 410,746 - Pf6N2E2_343 0.34 +0.9 410,858 - Pf6N2E2_343 0.50 -0.8 411,104 + Pf6N2E2_343 0.83 +0.9 411,105 - +0.9 411,105 - Pf6N2E2_343 0.83 -1.7 411,105 - Pf6N2E2_343 0.83 +0.9 411,107 + Pf6N2E2_343 0.84 +0.9 411,340 - Pf6N2E2_344 0.48 +0.9 411,340 - Pf6N2E2_344 0.48 +0.9 411,351 + Pf6N2E2_344 0.53 -2.7 411,352 - Pf6N2E2_344 0.54 -2.5 411,352 - Pf6N2E2_344 0.54 -0.7 411,483 + +0.9 411,484 - -0.1 411,518 + -0.1 411,518 + +0.9 411,762 + Pf6N2E2_345 0.12 -0.1 411,810 + Pf6N2E2_345 0.15 -0.7 411,810 + Pf6N2E2_345 0.15 -1.1 411,879 + Pf6N2E2_345 0.21 -0.1 411,879 + Pf6N2E2_345 0.21 -3.0 411,879 + Pf6N2E2_345 0.21 +0.9 411,880 - Pf6N2E2_345 0.21 -0.1 411,921 + Pf6N2E2_345 0.24 +0.9 411,921 + Pf6N2E2_345 0.24 -0.1 411,921 + Pf6N2E2_345 0.24 +0.9 411,954 + Pf6N2E2_345 0.26 +0.9 411,954 + Pf6N2E2_345 0.26 -1.1 411,954 + Pf6N2E2_345 0.26 -2.1 411,954 + Pf6N2E2_345 0.26 -0.1 411,954 + Pf6N2E2_345 0.26 -1.7 411,955 - Pf6N2E2_345 0.27 +0.9 411,955 - Pf6N2E2_345 0.27 -0.1 411,955 - Pf6N2E2_345 0.27 +0.9 411,955 - Pf6N2E2_345 0.27 +0.9 412,065 - Pf6N2E2_345 0.35 +0.9 412,068 + Pf6N2E2_345 0.35 +0.9 412,068 + Pf6N2E2_345 0.35 +0.9 412,068 + Pf6N2E2_345 0.35 +0.9 412,284 + Pf6N2E2_345 0.52 -1.1 412,284 + Pf6N2E2_345 0.52 -0.1 412,328 + Pf6N2E2_345 0.55 +0.9 412,329 - Pf6N2E2_345 0.55 -1.1
Or see this region's nucleotide sequence