Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3401

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
3,945,030	+		Pf6N2E2_3400	0.27	-1.0
3,945,030	+		Pf6N2E2_3400	0.27	+1.1
3,945,030	+		Pf6N2E2_3400	0.27	+1.1
3,945,030	+		Pf6N2E2_3400	0.27	-0.9
3,945,069	+		Pf6N2E2_3400	0.32	+0.1
3,945,070	-		Pf6N2E2_3400	0.32	-0.5
3,945,107	+		Pf6N2E2_3400	0.36	+0.6
3,945,107	+		Pf6N2E2_3400	0.36	+1.1
3,945,107	+		Pf6N2E2_3400	0.36	+1.1
3,945,107	+		Pf6N2E2_3400	0.36	-2.1
3,945,107	+		Pf6N2E2_3400	0.36	+1.1
3,945,107	+		Pf6N2E2_3400	0.36	+0.1
3,945,108	-		Pf6N2E2_3400	0.37	-0.9
3,945,214	+		Pf6N2E2_3400	0.50	+1.1
3,945,214	+		Pf6N2E2_3400	0.50	+0.1
3,945,223	+		Pf6N2E2_3400	0.51	-0.5
3,945,223	+		Pf6N2E2_3400	0.51	+1.1
3,945,223	+		Pf6N2E2_3400	0.51	+1.1
3,945,224	-		Pf6N2E2_3400	0.51	-1.2
3,945,224	-		Pf6N2E2_3400	0.51	+1.1
3,945,492	-		Pf6N2E2_3400	0.85	-1.0
3,945,492	-		Pf6N2E2_3400	0.85	-1.1
3,945,492	-		Pf6N2E2_3400	0.85	+1.1
3,945,495	+		Pf6N2E2_3400	0.85	+1.1
3,945,528	-		Pf6N2E2_3400	0.89	+1.1
3,945,561	-				+1.1
3,945,578	+				+0.1
3,945,580	+				+0.1
3,945,580	+				-0.9
3,945,581	-				-0.5
3,945,581	-				-1.2
3,945,624	+				-0.5
3,945,625	-				-0.6
3,945,625	-				+1.1
3,945,625	-				+0.1
3,945,632	+				+1.1
3,945,632	+				-1.3
3,945,632	+				+0.1
3,945,632	+				+1.1
3,945,633	-				+1.1
3,945,633	-				+0.1
3,945,633	-				+1.1
3,945,633	-				+0.1
3,945,633	-				-0.1
3,945,710	+				+1.1
3,945,733	+				+1.1
3,945,751	-				-2.1
3,945,751	-				+1.1
3,945,751	-				-0.5
3,945,751	-				+1.1
3,945,751	-				+1.1
3,945,784	-				+1.1
3,945,852	-				-0.1
3,945,994	-				+1.1
3,946,056	+		Pf6N2E2_3401	0.27	+1.1
3,946,056	+		Pf6N2E2_3401	0.27	+0.1
3,946,056	+		Pf6N2E2_3401	0.27	-2.4
3,946,183	+		Pf6N2E2_3401	0.61	-2.1
3,946,183	+		Pf6N2E2_3401	0.61	+0.1
3,946,183	+		Pf6N2E2_3401	0.61	+0.1
3,946,183	+		Pf6N2E2_3401	0.61	-1.1
3,946,183	+		Pf6N2E2_3401	0.61	+1.1
3,946,184	-		Pf6N2E2_3401	0.61	+0.1
3,946,184	-		Pf6N2E2_3401	0.61	+1.1
3,946,184	-		Pf6N2E2_3401	0.61	+1.1
3,946,184	-		Pf6N2E2_3401	0.61	-2.6
3,946,184	-		Pf6N2E2_3401	0.61	-3.4
3,946,256	+		Pf6N2E2_3401	0.81	+1.1
3,946,256	+		Pf6N2E2_3401	0.81	+0.1
3,946,256	+		Pf6N2E2_3401	0.81	-2.4
3,946,256	+		Pf6N2E2_3401	0.81	+1.1
3,946,256	+		Pf6N2E2_3401	0.81	+0.1
3,946,257	-		Pf6N2E2_3401	0.81	+1.1
3,946,257	-		Pf6N2E2_3401	0.81	-1.7
3,946,257	-		Pf6N2E2_3401	0.81	-1.9
3,946,257	-		Pf6N2E2_3401	0.81	-1.2
3,946,333	+				+1.1
3,946,334	-				+1.1
3,946,354	+				+1.1
3,946,355	-				+0.1
3,946,398	-				-0.9
3,946,444	+				-0.9
3,946,444	+				+1.1
3,946,445	-				-0.8
3,946,445	-				-1.5
3,946,674	-		Pf6N2E2_3402	0.26	-1.7
3,946,674	-		Pf6N2E2_3402	0.26	+1.1
3,946,733	+		Pf6N2E2_3402	0.31	+1.1
3,946,733	+		Pf6N2E2_3402	0.31	+0.1
3,946,733	+		Pf6N2E2_3402	0.31	-1.9
3,946,734	-		Pf6N2E2_3402	0.31	+1.1
3,946,734	-		Pf6N2E2_3402	0.31	+1.1
3,946,734	-		Pf6N2E2_3402	0.31	-1.4
3,946,734	-		Pf6N2E2_3402	0.31	-0.9
3,946,742	-		Pf6N2E2_3402	0.32	+1.1
3,946,785	+		Pf6N2E2_3402	0.35	-0.5
3,946,786	-		Pf6N2E2_3402	0.35	+1.1
3,946,786	-		Pf6N2E2_3402	0.35	-1.2
3,946,786	-		Pf6N2E2_3402	0.35	+1.1
3,946,802	-		Pf6N2E2_3402	0.36	+0.1
3,947,036	+		Pf6N2E2_3402	0.55	-0.9
3,947,036	+		Pf6N2E2_3402	0.55	+1.1
3,947,037	-		Pf6N2E2_3402	0.55	-0.5
3,947,037	-		Pf6N2E2_3402	0.55	+1.1
3,947,037	-		Pf6N2E2_3402	0.55	+1.1
3,947,037	-		Pf6N2E2_3402	0.55	+1.1
3,947,037	-		Pf6N2E2_3402	0.55	+0.1
3,947,039	-		Pf6N2E2_3402	0.56	-2.2
3,947,294	+		Pf6N2E2_3402	0.76	+0.1
3,947,295	-		Pf6N2E2_3402	0.76	+1.1
3,947,295	-		Pf6N2E2_3402	0.76	+0.1