Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2135

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
2,539,600	+		Pf6N2E2_2134	0.37	-0.8
2,539,600	+		Pf6N2E2_2134	0.37	-0.7
2,539,600	+		Pf6N2E2_2134	0.37	-2.5
2,539,600	+		Pf6N2E2_2134	0.37	-1.9
2,539,601	-		Pf6N2E2_2134	0.37	-1.3
2,539,601	-		Pf6N2E2_2134	0.37	-1.1
2,539,601	-		Pf6N2E2_2134	0.37	-1.5
2,539,601	-		Pf6N2E2_2134	0.37	+0.9
2,539,651	+		Pf6N2E2_2134	0.44	-1.7
2,539,651	+		Pf6N2E2_2134	0.44	-0.1
2,539,651	+		Pf6N2E2_2134	0.44	+0.9
2,539,652	-		Pf6N2E2_2134	0.44	+0.3
2,539,652	-		Pf6N2E2_2134	0.44	-0.1
2,539,652	-		Pf6N2E2_2134	0.44	-0.7
2,539,652	-		Pf6N2E2_2134	0.44	+0.9
2,539,652	-		Pf6N2E2_2134	0.44	+0.9
2,539,699	+		Pf6N2E2_2134	0.51	+0.9
2,539,700	-		Pf6N2E2_2134	0.51	-1.6
2,539,700	-		Pf6N2E2_2134	0.51	-1.8
2,539,700	-		Pf6N2E2_2134	0.51	-0.1
2,539,700	-		Pf6N2E2_2134	0.51	-0.7
2,539,838	-		Pf6N2E2_2134	0.69	+0.9
2,539,838	-		Pf6N2E2_2134	0.69	-1.1
2,539,858	+		Pf6N2E2_2134	0.72	-0.6
2,539,858	+		Pf6N2E2_2134	0.72	+0.9
2,539,859	-		Pf6N2E2_2134	0.72	+0.9
2,540,274	+				+0.9
2,540,364	+				+0.9
2,540,364	+				+0.9
2,540,364	+				-0.1
2,540,364	+				+0.9
2,540,365	-				+0.9
2,540,365	-				-2.2
2,540,391	+				-1.4
2,540,452	-				+0.9
2,540,548	+		Pf6N2E2_2135	0.12	-1.9
2,540,549	-		Pf6N2E2_2135	0.12	-0.9
2,540,558	+		Pf6N2E2_2135	0.13	-0.7
2,540,558	+		Pf6N2E2_2135	0.13	+0.9
2,540,558	+		Pf6N2E2_2135	0.13	-0.7
2,540,559	-		Pf6N2E2_2135	0.13	-1.1
2,540,787	+		Pf6N2E2_2135	0.34	+0.9
2,540,905	+		Pf6N2E2_2135	0.44	+0.9
2,540,905	+		Pf6N2E2_2135	0.44	-0.7
2,540,906	-		Pf6N2E2_2135	0.45	-2.4
2,540,906	-		Pf6N2E2_2135	0.45	-0.1
2,540,942	-		Pf6N2E2_2135	0.48	-0.1
2,540,942	-		Pf6N2E2_2135	0.48	-0.1
2,540,992	+		Pf6N2E2_2135	0.52	-3.2
2,540,993	-		Pf6N2E2_2135	0.52	-1.7
2,541,061	+		Pf6N2E2_2135	0.59	+0.9
2,541,061	+		Pf6N2E2_2135	0.59	+0.9
2,541,062	-		Pf6N2E2_2135	0.59	-0.1
2,541,062	-		Pf6N2E2_2135	0.59	+0.9
2,541,117	+		Pf6N2E2_2135	0.64	+0.9
2,541,159	+		Pf6N2E2_2135	0.67	-0.1
2,541,271	+		Pf6N2E2_2135	0.78	-1.2
2,541,272	-		Pf6N2E2_2135	0.78	+0.9
2,541,272	-		Pf6N2E2_2135	0.78	-2.1
2,541,272	-		Pf6N2E2_2135	0.78	-0.1
2,541,272	-		Pf6N2E2_2135	0.78	-2.1
2,541,304	+		Pf6N2E2_2135	0.80	+0.9
2,541,304	+		Pf6N2E2_2135	0.80	-3.2
2,541,304	+		Pf6N2E2_2135	0.80	-0.7
2,541,305	-		Pf6N2E2_2135	0.81	+0.9
2,541,305	-		Pf6N2E2_2135	0.81	-0.7
2,541,305	-		Pf6N2E2_2135	0.81	+0.9
2,541,332	-		Pf6N2E2_2135	0.83	+0.9
2,541,332	-		Pf6N2E2_2135	0.83	-1.1
2,541,332	-		Pf6N2E2_2135	0.83	-0.7
2,541,382	+		Pf6N2E2_2135	0.88	-0.7
2,541,481	+				-0.7
2,541,481	+				-2.0
2,541,481	+				+0.9
2,541,482	-				-0.1
2,541,482	-				+0.9
2,541,518	-				-2.4
2,541,518	-				-1.0
2,541,579	+				-0.7
2,541,579	+				-1.1
2,541,616	+				-1.7
2,541,616	+				+0.9
2,541,616	+				-0.1
2,541,617	-				-2.3
2,541,617	-				-1.6
2,541,617	-				-0.9
2,541,939	+		Pf6N2E2_2136	0.39	+0.9
2,541,939	+		Pf6N2E2_2136	0.39	+0.9
2,541,939	+		Pf6N2E2_2136	0.39	+0.9
2,541,939	+		Pf6N2E2_2136	0.39	-2.5
2,541,940	-		Pf6N2E2_2136	0.39	-0.1
2,541,940	-		Pf6N2E2_2136	0.39	+0.9
2,541,940	-		Pf6N2E2_2136	0.39	-0.1
2,542,101	+		Pf6N2E2_2136	0.58	+0.9
2,542,101	+		Pf6N2E2_2136	0.58	+0.9
2,542,101	+		Pf6N2E2_2136	0.58	-0.1
2,542,101	+		Pf6N2E2_2136	0.58	-3.8
2,542,101	+		Pf6N2E2_2136	0.58	-0.1
2,542,101	+		Pf6N2E2_2136	0.58	-0.1
2,542,101	+		Pf6N2E2_2136	0.58	-0.1
2,542,101	+		Pf6N2E2_2136	0.58	-1.7
2,542,102	-		Pf6N2E2_2136	0.59	+0.9
2,542,102	-		Pf6N2E2_2136	0.59	+0.3
2,542,102	-		Pf6N2E2_2136	0.59	+0.9
2,542,102	-		Pf6N2E2_2136	0.59	-2.1
2,542,176	+		Pf6N2E2_2136	0.68	+0.9
2,542,399	+				-0.7
2,542,400	-				+0.9
2,542,440	+				-2.7
2,542,441	-				+0.9
2,542,441	-				+0.9