Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_145 and Pf6N2E2_146 are separated by 235 nucleotides Pf6N2E2_146 and Pf6N2E2_147 are separated by 4 nucleotides
Pf6N2E2_145 - putative exported protein, at 197,183 to 200,836
_145
Pf6N2E2_146 - Transcriptional regulator, MarR family, at 201,072 to 201,554
_146
Pf6N2E2_147 - Outer membrane component of tripartite multidrug resistance system, at 201,559 to 203,013
_147
Position (kb) 201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 200.363 kb on + strand, within Pf6N2E2_145 at 200.363 kb on + strand, within Pf6N2E2_145 at 200.492 kb on + strand at 200.493 kb on - strand at 200.608 kb on + strand at 200.754 kb on - strand at 200.774 kb on + strand at 200.774 kb on + strand at 200.775 kb on - strand at 200.775 kb on - strand at 200.819 kb on + strand at 200.819 kb on + strand at 200.819 kb on + strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.834 kb on + strand at 200.835 kb on - strand at 200.835 kb on - strand at 200.881 kb on - strand at 200.959 kb on + strand at 200.959 kb on + strand at 200.960 kb on - strand at 200.960 kb on - strand at 200.960 kb on - strand at 200.977 kb on + strand at 200.993 kb on - strand at 200.996 kb on + strand at 200.997 kb on - strand at 200.997 kb on - strand at 201.018 kb on + strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.052 kb on - strand at 201.167 kb on + strand, within Pf6N2E2_146 at 201.167 kb on + strand, within Pf6N2E2_146 at 201.552 kb on + strand at 201.552 kb on + strand at 201.553 kb on - strand at 201.553 kb on - strand at 201.616 kb on + strand at 201.838 kb on + strand, within Pf6N2E2_147 at 201.839 kb on - strand, within Pf6N2E2_147 at 201.940 kb on + strand, within Pf6N2E2_147 at 201.940 kb on + strand, within Pf6N2E2_147 at 201.940 kb on + strand, within Pf6N2E2_147 at 201.941 kb on - strand, within Pf6N2E2_147 at 201.941 kb on - strand, within Pf6N2E2_147 at 201.941 kb on - strand, within Pf6N2E2_147 at 201.960 kb on - strand, within Pf6N2E2_147 at 201.960 kb on - strand, within Pf6N2E2_147 at 201.976 kb on + strand, within Pf6N2E2_147 at 201.976 kb on + strand, within Pf6N2E2_147 at 201.976 kb on + strand, within Pf6N2E2_147 at 201.976 kb on + strand, within Pf6N2E2_147 at 201.977 kb on - strand, within Pf6N2E2_147 at 201.977 kb on - strand, within Pf6N2E2_147 at 202.100 kb on - strand, within Pf6N2E2_147 at 202.125 kb on + strand, within Pf6N2E2_147 at 202.125 kb on + strand, within Pf6N2E2_147 at 202.125 kb on + strand, within Pf6N2E2_147 at 202.125 kb on + strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.126 kb on - strand, within Pf6N2E2_147 at 202.129 kb on + strand, within Pf6N2E2_147 at 202.129 kb on + strand, within Pf6N2E2_147 at 202.129 kb on + strand, within Pf6N2E2_147 at 202.129 kb on + strand, within Pf6N2E2_147 at 202.130 kb on - strand, within Pf6N2E2_147 at 202.217 kb on - strand, within Pf6N2E2_147 at 202.498 kb on + strand, within Pf6N2E2_147
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 200,363 + Pf6N2E2_145 0.87 -1.8 200,363 + Pf6N2E2_145 0.87 -1.9 200,492 + -1.8 200,493 - -2.2 200,608 + -2.0 200,754 - -1.8 200,774 + -2.5 200,774 + -1.9 200,775 - -2.0 200,775 - -1.6 200,819 + -2.2 200,819 + -1.9 200,819 + -1.9 200,820 - -1.5 200,820 - -1.9 200,820 - -2.1 200,820 - -2.1 200,820 - -2.0 200,820 - -2.1 200,834 + +0.9 200,835 - +0.9 200,835 - -0.6 200,881 - -2.2 200,959 + -1.1 200,959 + -0.1 200,960 - -0.4 200,960 - +0.9 200,960 - +0.9 200,977 + -0.1 200,993 - +0.9 200,996 + +0.9 200,997 - +0.9 200,997 - +0.9 201,018 + -0.1 201,039 - -0.6 201,039 - +0.9 201,039 - -0.5 201,039 - -1.6 201,052 - -1.5 201,167 + Pf6N2E2_146 0.20 -0.6 201,167 + Pf6N2E2_146 0.20 -2.5 201,552 + -1.0 201,552 + -0.1 201,553 - +0.9 201,553 - +0.9 201,616 + -0.1 201,838 + Pf6N2E2_147 0.19 -1.5 201,839 - Pf6N2E2_147 0.19 +0.9 201,940 + Pf6N2E2_147 0.26 +0.9 201,940 + Pf6N2E2_147 0.26 -2.0 201,940 + Pf6N2E2_147 0.26 +0.9 201,941 - Pf6N2E2_147 0.26 -0.6 201,941 - Pf6N2E2_147 0.26 -0.1 201,941 - Pf6N2E2_147 0.26 +0.9 201,960 - Pf6N2E2_147 0.28 +0.9 201,960 - Pf6N2E2_147 0.28 +0.9 201,976 + Pf6N2E2_147 0.29 -0.6 201,976 + Pf6N2E2_147 0.29 -3.3 201,976 + Pf6N2E2_147 0.29 +0.9 201,976 + Pf6N2E2_147 0.29 +0.9 201,977 - Pf6N2E2_147 0.29 +0.9 201,977 - Pf6N2E2_147 0.29 +0.9 202,100 - Pf6N2E2_147 0.37 +0.9 202,125 + Pf6N2E2_147 0.39 +0.9 202,125 + Pf6N2E2_147 0.39 -1.4 202,125 + Pf6N2E2_147 0.39 +0.9 202,125 + Pf6N2E2_147 0.39 -0.5 202,126 - Pf6N2E2_147 0.39 +0.9 202,126 - Pf6N2E2_147 0.39 +0.9 202,126 - Pf6N2E2_147 0.39 +0.9 202,126 - Pf6N2E2_147 0.39 -1.1 202,126 - Pf6N2E2_147 0.39 +0.2 202,126 - Pf6N2E2_147 0.39 -1.0 202,126 - Pf6N2E2_147 0.39 -0.1 202,129 + Pf6N2E2_147 0.39 -0.1 202,129 + Pf6N2E2_147 0.39 -0.6 202,129 + Pf6N2E2_147 0.39 -0.6 202,129 + Pf6N2E2_147 0.39 +0.9 202,130 - Pf6N2E2_147 0.39 -1.1 202,217 - Pf6N2E2_147 0.45 +0.5 202,498 + Pf6N2E2_147 0.65 -0.1
Or see this region's nucleotide sequence