Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5881

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
6,700,160	+				+0.4
6,700,310	-		Pf6N2E2_5880	0.28	+0.9
6,700,310	-		Pf6N2E2_5880	0.28	-0.7
6,700,549	+		Pf6N2E2_5880	0.56	-0.4
6,700,581	+		Pf6N2E2_5880	0.59	-0.1
6,700,623	-		Pf6N2E2_5880	0.64	+0.9
6,700,660	+		Pf6N2E2_5880	0.69	+0.5
6,700,661	-		Pf6N2E2_5880	0.69	-0.7
6,700,662	+		Pf6N2E2_5880	0.69	-0.1
6,700,662	+		Pf6N2E2_5880	0.69	-1.5
6,700,662	+		Pf6N2E2_5880	0.69	+0.3
6,700,662	+		Pf6N2E2_5880	0.69	-1.0
6,700,662	+		Pf6N2E2_5880	0.69	-0.1
6,700,662	+		Pf6N2E2_5880	0.69	+0.9
6,700,662	+		Pf6N2E2_5880	0.69	+0.5
6,700,662	+		Pf6N2E2_5880	0.69	-0.1
6,700,662	+		Pf6N2E2_5880	0.69	+0.9
6,700,662	+		Pf6N2E2_5880	0.69	+0.9
6,700,662	+		Pf6N2E2_5880	0.69	-1.1
6,700,663	-		Pf6N2E2_5880	0.69	-0.1
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	-0.1
6,700,663	-		Pf6N2E2_5880	0.69	-0.1
6,700,663	-		Pf6N2E2_5880	0.69	-0.9
6,700,663	-		Pf6N2E2_5880	0.69	-1.1
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	+0.2
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	-0.8
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,663	-		Pf6N2E2_5880	0.69	-0.7
6,700,663	-		Pf6N2E2_5880	0.69	+0.9
6,700,856	+				+0.9
6,700,856	+				-0.1
6,700,856	+				-0.9
6,700,856	+				+0.9
6,700,856	+				+0.9
6,700,857	-				+0.9
6,700,857	-				-0.7
6,700,857	-				+0.9
6,700,857	-				-0.8
6,700,890	-				+0.9
6,700,993	-				-0.7
6,701,218	+		Pf6N2E2_5881	0.20	+0.9
6,701,218	+		Pf6N2E2_5881	0.20	+0.9
6,701,218	+		Pf6N2E2_5881	0.20	+0.9
6,701,219	-		Pf6N2E2_5881	0.20	-0.7
6,701,301	+		Pf6N2E2_5881	0.30	+0.9
6,701,301	+		Pf6N2E2_5881	0.30	-1.4
6,701,302	-		Pf6N2E2_5881	0.30	-0.7
6,701,302	-		Pf6N2E2_5881	0.30	-1.3
6,701,305	+		Pf6N2E2_5881	0.30	-0.1
6,701,305	+		Pf6N2E2_5881	0.30	-0.1
6,701,305	+		Pf6N2E2_5881	0.30	-0.7
6,701,305	+		Pf6N2E2_5881	0.30	-1.1
6,701,305	+		Pf6N2E2_5881	0.30	-0.1
6,701,305	+		Pf6N2E2_5881	0.30	+0.9
6,701,305	+		Pf6N2E2_5881	0.30	+0.9
6,701,306	-		Pf6N2E2_5881	0.31	-0.9
6,701,343	+		Pf6N2E2_5881	0.35	-0.1
6,701,344	-		Pf6N2E2_5881	0.35	-0.7
6,701,461	+		Pf6N2E2_5881	0.49	+0.9
6,701,461	+		Pf6N2E2_5881	0.49	+0.9
6,701,462	-		Pf6N2E2_5881	0.50	-0.1
6,701,462	-		Pf6N2E2_5881	0.50	-0.1
6,701,462	-		Pf6N2E2_5881	0.50	-0.1
6,701,462	-		Pf6N2E2_5881	0.50	+0.9
6,701,536	+		Pf6N2E2_5881	0.59	+0.9
6,701,536	+		Pf6N2E2_5881	0.59	+0.9
6,701,536	+		Pf6N2E2_5881	0.59	-0.1
6,701,536	+		Pf6N2E2_5881	0.59	-0.7
6,701,536	+		Pf6N2E2_5881	0.59	-0.1
6,701,536	+		Pf6N2E2_5881	0.59	+0.6
6,701,537	-		Pf6N2E2_5881	0.59	-0.1
6,701,537	-		Pf6N2E2_5881	0.59	+0.9
6,701,566	+		Pf6N2E2_5881	0.62	-1.1
6,701,566	+		Pf6N2E2_5881	0.62	-0.1
6,701,567	-		Pf6N2E2_5881	0.62	+0.9
6,701,873	-				+0.9
6,701,936	+				+0.9
6,701,936	+				+0.9
6,701,936	+				-0.1
6,701,936	+				-1.0
6,701,936	+				+0.9
6,701,936	+				-0.1
6,701,936	+				-0.1
6,701,936	+				-0.7
6,702,132	+		Pf6N2E2_5882	0.19	+0.9
6,702,133	-		Pf6N2E2_5882	0.19	-0.1
6,702,133	-		Pf6N2E2_5882	0.19	-0.1
6,702,354	-		Pf6N2E2_5882	0.40	-0.1
6,702,354	-		Pf6N2E2_5882	0.40	+0.9
6,702,430	+		Pf6N2E2_5882	0.47	+0.9
6,702,430	+		Pf6N2E2_5882	0.47	-0.1
6,702,452	+		Pf6N2E2_5882	0.49	-0.1
6,702,528	-		Pf6N2E2_5882	0.57	-0.4
6,702,528	-		Pf6N2E2_5882	0.57	+0.9
6,702,528	-		Pf6N2E2_5882	0.57	-1.1
6,702,528	-		Pf6N2E2_5882	0.57	+0.9
6,702,815	+		Pf6N2E2_5882	0.84	-0.1