Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5153 and Pf6N2E2_5154 are separated by 275 nucleotides Pf6N2E2_5154 and Pf6N2E2_5155 are separated by 3 nucleotides
Pf6N2E2_5153 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 5,940,125 to 5,940,925
_5153
Pf6N2E2_5154 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 5,941,201 to 5,941,686
_5154
Pf6N2E2_5155 - Poly(A) polymerase (EC 2.7.7.19), at 5,941,690 to 5,943,087
_5155
Position (kb) 5941
5942 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5940.206 kb on - strand, within Pf6N2E2_5153 at 5940.291 kb on - strand, within Pf6N2E2_5153 at 5940.475 kb on + strand, within Pf6N2E2_5153 at 5940.475 kb on + strand, within Pf6N2E2_5153 at 5940.476 kb on - strand, within Pf6N2E2_5153 at 5940.476 kb on - strand, within Pf6N2E2_5153 at 5940.476 kb on - strand, within Pf6N2E2_5153 at 5940.477 kb on + strand, within Pf6N2E2_5153 at 5940.477 kb on + strand, within Pf6N2E2_5153 at 5940.477 kb on + strand, within Pf6N2E2_5153 at 5940.477 kb on + strand, within Pf6N2E2_5153 at 5940.478 kb on - strand, within Pf6N2E2_5153 at 5940.478 kb on - strand, within Pf6N2E2_5153 at 5940.478 kb on - strand, within Pf6N2E2_5153 at 5940.478 kb on - strand, within Pf6N2E2_5153 at 5940.657 kb on + strand, within Pf6N2E2_5153 at 5940.657 kb on + strand, within Pf6N2E2_5153 at 5940.658 kb on - strand, within Pf6N2E2_5153 at 5940.658 kb on - strand, within Pf6N2E2_5153 at 5940.726 kb on + strand, within Pf6N2E2_5153 at 5940.727 kb on - strand, within Pf6N2E2_5153 at 5940.853 kb on - strand at 5940.853 kb on - strand at 5940.853 kb on - strand at 5940.914 kb on - strand at 5940.916 kb on + strand at 5940.916 kb on + strand at 5940.916 kb on + strand at 5940.916 kb on + strand at 5940.917 kb on - strand at 5940.917 kb on - strand at 5940.917 kb on - strand at 5940.917 kb on - strand at 5940.940 kb on + strand at 5940.941 kb on - strand at 5940.955 kb on + strand at 5940.956 kb on - strand at 5940.965 kb on - strand at 5940.985 kb on + strand at 5940.985 kb on + strand at 5940.985 kb on + strand at 5940.985 kb on + strand at 5940.985 kb on + strand at 5940.985 kb on + strand at 5940.985 kb on + strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.986 kb on - strand at 5940.988 kb on - strand at 5941.002 kb on + strand at 5941.002 kb on + strand at 5941.002 kb on + strand at 5941.002 kb on + strand at 5941.003 kb on - strand at 5941.003 kb on - strand at 5941.003 kb on - strand at 5941.003 kb on - strand at 5941.017 kb on + strand at 5941.018 kb on - strand at 5941.018 kb on - strand at 5941.018 kb on - strand at 5941.069 kb on - strand at 5941.069 kb on - strand at 5941.069 kb on - strand at 5941.070 kb on + strand at 5941.070 kb on + strand at 5941.070 kb on + strand at 5941.071 kb on - strand at 5941.071 kb on - strand at 5941.071 kb on - strand at 5941.071 kb on - strand at 5941.130 kb on + strand at 5941.206 kb on + strand at 5941.674 kb on - strand at 5941.674 kb on - strand at 5942.235 kb on - strand, within Pf6N2E2_5155 at 5942.462 kb on - strand, within Pf6N2E2_5155 at 5942.592 kb on - strand, within Pf6N2E2_5155 at 5942.595 kb on - strand, within Pf6N2E2_5155
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 5,940,206 - Pf6N2E2_5153 0.10 +1.0 5,940,291 - Pf6N2E2_5153 0.21 -1.4 5,940,475 + Pf6N2E2_5153 0.44 +1.0 5,940,475 + Pf6N2E2_5153 0.44 +1.0 5,940,476 - Pf6N2E2_5153 0.44 -0.6 5,940,476 - Pf6N2E2_5153 0.44 +1.0 5,940,476 - Pf6N2E2_5153 0.44 -0.6 5,940,477 + Pf6N2E2_5153 0.44 +1.0 5,940,477 + Pf6N2E2_5153 0.44 +1.0 5,940,477 + Pf6N2E2_5153 0.44 +1.0 5,940,477 + Pf6N2E2_5153 0.44 +2.0 5,940,478 - Pf6N2E2_5153 0.44 -2.0 5,940,478 - Pf6N2E2_5153 0.44 -0.6 5,940,478 - Pf6N2E2_5153 0.44 +1.0 5,940,478 - Pf6N2E2_5153 0.44 -1.4 5,940,657 + Pf6N2E2_5153 0.66 +0.0 5,940,657 + Pf6N2E2_5153 0.66 -0.6 5,940,658 - Pf6N2E2_5153 0.67 -1.5 5,940,658 - Pf6N2E2_5153 0.67 +1.0 5,940,726 + Pf6N2E2_5153 0.75 +1.0 5,940,727 - Pf6N2E2_5153 0.75 +1.0 5,940,853 - +1.0 5,940,853 - +1.0 5,940,853 - +1.0 5,940,914 - +1.0 5,940,916 + +1.0 5,940,916 + +0.0 5,940,916 + +1.0 5,940,916 + +1.0 5,940,917 - -1.0 5,940,917 - -0.6 5,940,917 - -1.0 5,940,917 - +1.0 5,940,940 + +1.0 5,940,941 - +1.0 5,940,955 + +1.0 5,940,956 - +1.0 5,940,965 - +1.0 5,940,985 + +0.0 5,940,985 + +0.0 5,940,985 + +1.0 5,940,985 + +1.0 5,940,985 + +1.0 5,940,985 + +1.0 5,940,985 + +0.0 5,940,986 - +1.0 5,940,986 - +1.0 5,940,986 - +0.0 5,940,986 - +0.0 5,940,986 - +1.0 5,940,986 - -1.3 5,940,986 - +0.0 5,940,986 - +1.0 5,940,986 - -0.6 5,940,986 - -0.6 5,940,986 - +1.0 5,940,986 - +1.0 5,940,988 - -0.2 5,941,002 + +1.0 5,941,002 + +0.0 5,941,002 + +1.0 5,941,002 + +1.0 5,941,003 - +1.0 5,941,003 - +0.0 5,941,003 - +0.0 5,941,003 - +0.0 5,941,017 + -0.6 5,941,018 - +1.0 5,941,018 - +1.0 5,941,018 - +0.8 5,941,069 - -1.0 5,941,069 - +1.0 5,941,069 - +1.0 5,941,070 + +0.0 5,941,070 + +0.0 5,941,070 + +0.0 5,941,071 - +0.0 5,941,071 - -0.6 5,941,071 - +0.0 5,941,071 - +0.0 5,941,130 + +1.0 5,941,206 + -0.7 5,941,674 - +1.0 5,941,674 - -1.4 5,942,235 - Pf6N2E2_5155 0.39 -2.0 5,942,462 - Pf6N2E2_5155 0.55 +0.0 5,942,592 - Pf6N2E2_5155 0.65 -0.4 5,942,595 - Pf6N2E2_5155 0.65 +1.0
Or see this region's nucleotide sequence