Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5035

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5033 and Pf6N2E2_5034 are separated by 227 nucleotidesPf6N2E2_5034 and Pf6N2E2_5035 are separated by 42 nucleotidesPf6N2E2_5035 and Pf6N2E2_5036 are separated by 184 nucleotides Pf6N2E2_5033 - Channel-forming transporter/cytolysins activator of TpsB family, at 5,808,698 to 5,810,347 _5033 Pf6N2E2_5034 - hypothetical protein, at 5,810,575 to 5,811,198 _5034 Pf6N2E2_5035 - FIG00954854: hypothetical protein, at 5,811,241 to 5,811,735 _5035 Pf6N2E2_5036 - Cobalt-zinc-cadmium resistance protein, at 5,811,920 to 5,812,813 _5036 Position (kb) 5811 5812Strain fitness (log2 ratio) -2 -1 0 1 2at 5810.341 kb on + strandat 5810.341 kb on + strandat 5810.341 kb on + strandat 5810.341 kb on + strandat 5810.341 kb on + strandat 5810.342 kb on - strandat 5810.342 kb on - strandat 5810.342 kb on - strandat 5810.342 kb on - strandat 5810.411 kb on + strandat 5810.412 kb on - strandat 5810.447 kb on + strandat 5810.447 kb on + strandat 5810.447 kb on + strandat 5810.448 kb on - strandat 5810.448 kb on - strandat 5810.486 kb on + strandat 5810.487 kb on - strandat 5810.487 kb on - strandat 5810.487 kb on - strandat 5810.487 kb on - strandat 5810.487 kb on - strandat 5810.487 kb on - strandat 5810.487 kb on - strandat 5810.516 kb on + strandat 5810.516 kb on + strandat 5810.638 kb on + strand, within Pf6N2E2_5034at 5810.691 kb on + strand, within Pf6N2E2_5034at 5810.691 kb on + strand, within Pf6N2E2_5034at 5810.691 kb on + strand, within Pf6N2E2_5034at 5810.692 kb on - strand, within Pf6N2E2_5034at 5810.692 kb on - strand, within Pf6N2E2_5034at 5810.692 kb on - strand, within Pf6N2E2_5034at 5810.692 kb on - strand, within Pf6N2E2_5034at 5810.869 kb on + strand, within Pf6N2E2_5034at 5810.953 kb on + strand, within Pf6N2E2_5034at 5810.953 kb on + strand, within Pf6N2E2_5034at 5810.954 kb on - strand, within Pf6N2E2_5034at 5810.971 kb on + strand, within Pf6N2E2_5034at 5810.971 kb on + strand, within Pf6N2E2_5034at 5810.971 kb on + strand, within Pf6N2E2_5034at 5811.031 kb on - strand, within Pf6N2E2_5034at 5811.041 kb on + strand, within Pf6N2E2_5034at 5811.092 kb on - strand, within Pf6N2E2_5034at 5811.238 kb on + strandat 5811.239 kb on - strandat 5811.276 kb on - strandat 5811.281 kb on - strandat 5811.295 kb on + strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.301 kb on + strand, within Pf6N2E2_5035at 5811.302 kb on - strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.341 kb on - strand, within Pf6N2E2_5035at 5811.391 kb on + strand, within Pf6N2E2_5035at 5811.445 kb on + strand, within Pf6N2E2_5035at 5811.446 kb on - strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.476 kb on - strand, within Pf6N2E2_5035at 5811.476 kb on - strand, within Pf6N2E2_5035at 5811.476 kb on - strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.650 kb on - strand, within Pf6N2E2_5035at 5811.679 kb on + strand, within Pf6N2E2_5035at 5811.730 kb on + strandat 5811.730 kb on + strandat 5811.730 kb on + strandat 5811.731 kb on - strandat 5811.731 kb on - strandat 5811.731 kb on - strandat 5811.890 kb on - strandat 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.443 kb on - strand, within Pf6N2E2_5036at 5812.523 kb on + strand, within Pf6N2E2_5036at 5812.623 kb on + strand, within Pf6N2E2_5036at 5812.623 kb on + strand, within Pf6N2E2_5036

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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5,810,341 + +1.1
5,810,341 + +0.1
5,810,341 + -0.5
5,810,341 + +1.1
5,810,341 + +1.1
5,810,342 - +1.1
5,810,342 - +0.2
5,810,342 - -0.5
5,810,342 - +0.1
5,810,411 + +1.1
5,810,412 - +1.1
5,810,447 + +0.1
5,810,447 + +0.4
5,810,447 + +1.1
5,810,448 - -1.1
5,810,448 - +1.1
5,810,486 + +0.1
5,810,487 - +1.1
5,810,487 - -1.4
5,810,487 - +0.1
5,810,487 - -0.9
5,810,487 - -0.5
5,810,487 - +0.8
5,810,487 - +0.1
5,810,516 + +0.1
5,810,516 + +1.1
5,810,638 + Pf6N2E2_5034 0.10 +1.1
5,810,691 + Pf6N2E2_5034 0.19 -0.7
5,810,691 + Pf6N2E2_5034 0.19 -0.2
5,810,691 + Pf6N2E2_5034 0.19 -0.2
5,810,692 - Pf6N2E2_5034 0.19 +1.1
5,810,692 - Pf6N2E2_5034 0.19 +1.1
5,810,692 - Pf6N2E2_5034 0.19 -0.5
5,810,692 - Pf6N2E2_5034 0.19 +0.1
5,810,869 + Pf6N2E2_5034 0.47 -0.7
5,810,953 + Pf6N2E2_5034 0.61 +1.1
5,810,953 + Pf6N2E2_5034 0.61 +1.1
5,810,954 - Pf6N2E2_5034 0.61 -0.9
5,810,971 + Pf6N2E2_5034 0.63 -1.9
5,810,971 + Pf6N2E2_5034 0.63 -0.8
5,810,971 + Pf6N2E2_5034 0.63 +1.1
5,811,031 - Pf6N2E2_5034 0.73 +1.1
5,811,041 + Pf6N2E2_5034 0.75 +1.1
5,811,092 - Pf6N2E2_5034 0.83 -0.5
5,811,238 + +1.1
5,811,239 - +0.1
5,811,276 - -0.5
5,811,281 - +0.1
5,811,295 + Pf6N2E2_5035 0.11 -0.7
5,811,296 - Pf6N2E2_5035 0.11 +0.1
5,811,296 - Pf6N2E2_5035 0.11 -0.5
5,811,296 - Pf6N2E2_5035 0.11 +1.1
5,811,296 - Pf6N2E2_5035 0.11 +1.1
5,811,296 - Pf6N2E2_5035 0.11 -0.5
5,811,296 - Pf6N2E2_5035 0.11 -1.5
5,811,296 - Pf6N2E2_5035 0.11 +1.1
5,811,301 + Pf6N2E2_5035 0.12 +0.1
5,811,302 - Pf6N2E2_5035 0.12 +1.1
5,811,340 + Pf6N2E2_5035 0.20 +1.1
5,811,340 + Pf6N2E2_5035 0.20 -0.8
5,811,340 + Pf6N2E2_5035 0.20 +1.1
5,811,340 + Pf6N2E2_5035 0.20 +1.1
5,811,341 - Pf6N2E2_5035 0.20 -1.4
5,811,391 + Pf6N2E2_5035 0.30 +0.1
5,811,445 + Pf6N2E2_5035 0.41 +1.1
5,811,446 - Pf6N2E2_5035 0.41 +1.1
5,811,448 + Pf6N2E2_5035 0.42 +0.4
5,811,448 + Pf6N2E2_5035 0.42 +0.1
5,811,448 + Pf6N2E2_5035 0.42 +0.1
5,811,448 + Pf6N2E2_5035 0.42 -0.7
5,811,448 + Pf6N2E2_5035 0.42 +0.1
5,811,448 + Pf6N2E2_5035 0.42 +0.1
5,811,448 + Pf6N2E2_5035 0.42 -0.7
5,811,448 + Pf6N2E2_5035 0.42 +1.1
5,811,448 + Pf6N2E2_5035 0.42 -0.1
5,811,448 + Pf6N2E2_5035 0.42 -0.5
5,811,448 + Pf6N2E2_5035 0.42 +0.1
5,811,448 + Pf6N2E2_5035 0.42 -0.9
5,811,448 + Pf6N2E2_5035 0.42 -0.8
5,811,449 - Pf6N2E2_5035 0.42 +0.1
5,811,449 - Pf6N2E2_5035 0.42 +1.1
5,811,449 - Pf6N2E2_5035 0.42 -0.5
5,811,449 - Pf6N2E2_5035 0.42 +0.1
5,811,449 - Pf6N2E2_5035 0.42 -0.5
5,811,449 - Pf6N2E2_5035 0.42 +1.1
5,811,449 - Pf6N2E2_5035 0.42 +0.1
5,811,449 - Pf6N2E2_5035 0.42 +1.1
5,811,449 - Pf6N2E2_5035 0.42 -0.5
5,811,449 - Pf6N2E2_5035 0.42 +0.6
5,811,449 - Pf6N2E2_5035 0.42 +0.1
5,811,449 - Pf6N2E2_5035 0.42 +0.1
5,811,449 - Pf6N2E2_5035 0.42 +0.1
5,811,449 - Pf6N2E2_5035 0.42 -0.9
5,811,454 + Pf6N2E2_5035 0.43 +1.1
5,811,454 + Pf6N2E2_5035 0.43 +0.1
5,811,454 + Pf6N2E2_5035 0.43 +0.1
5,811,454 + Pf6N2E2_5035 0.43 +0.1
5,811,455 - Pf6N2E2_5035 0.43 -2.0
5,811,455 - Pf6N2E2_5035 0.43 +0.1
5,811,455 - Pf6N2E2_5035 0.43 +0.1
5,811,455 - Pf6N2E2_5035 0.43 +1.1
5,811,475 + Pf6N2E2_5035 0.47 +1.1
5,811,475 + Pf6N2E2_5035 0.47 -0.4
5,811,475 + Pf6N2E2_5035 0.47 +0.1
5,811,475 + Pf6N2E2_5035 0.47 +0.1
5,811,476 - Pf6N2E2_5035 0.47 +1.1
5,811,476 - Pf6N2E2_5035 0.47 -1.4
5,811,476 - Pf6N2E2_5035 0.47 +0.1
5,811,643 + Pf6N2E2_5035 0.81 -0.5
5,811,643 + Pf6N2E2_5035 0.81 -0.9
5,811,643 + Pf6N2E2_5035 0.81 +0.1
5,811,643 + Pf6N2E2_5035 0.81 -0.2
5,811,643 + Pf6N2E2_5035 0.81 +1.1
5,811,643 + Pf6N2E2_5035 0.81 +0.1
5,811,643 + Pf6N2E2_5035 0.81 +1.1
5,811,644 - Pf6N2E2_5035 0.81 +1.1
5,811,644 - Pf6N2E2_5035 0.81 -0.5
5,811,644 - Pf6N2E2_5035 0.81 -0.4
5,811,644 - Pf6N2E2_5035 0.81 -0.5
5,811,644 - Pf6N2E2_5035 0.81 +1.1
5,811,644 - Pf6N2E2_5035 0.81 -1.3
5,811,644 - Pf6N2E2_5035 0.81 +0.1
5,811,650 - Pf6N2E2_5035 0.83 +0.1
5,811,679 + Pf6N2E2_5035 0.88 +1.1
5,811,730 + +1.1
5,811,730 + +1.1
5,811,730 + +1.1
5,811,731 - -0.8
5,811,731 - -0.5
5,811,731 - -0.5
5,811,890 - +1.1
5,812,242 + Pf6N2E2_5036 0.36 -0.5
5,812,242 + Pf6N2E2_5036 0.36 -0.6
5,812,242 + Pf6N2E2_5036 0.36 -0.5
5,812,242 + Pf6N2E2_5036 0.36 -0.5
5,812,242 + Pf6N2E2_5036 0.36 +0.2
5,812,243 - Pf6N2E2_5036 0.36 +1.1
5,812,243 - Pf6N2E2_5036 0.36 +1.1
5,812,243 - Pf6N2E2_5036 0.36 -1.3
5,812,243 - Pf6N2E2_5036 0.36 +0.1
5,812,243 - Pf6N2E2_5036 0.36 +1.8
5,812,442 + Pf6N2E2_5036 0.58 -0.5
5,812,442 + Pf6N2E2_5036 0.58 +0.1
5,812,442 + Pf6N2E2_5036 0.58 -1.1
5,812,442 + Pf6N2E2_5036 0.58 +1.1
5,812,442 + Pf6N2E2_5036 0.58 -0.5
5,812,443 - Pf6N2E2_5036 0.59 +0.1
5,812,523 + Pf6N2E2_5036 0.67 -0.9
5,812,623 + Pf6N2E2_5036 0.79 -0.5
5,812,623 + Pf6N2E2_5036 0.79 -0.1

Or see this region's nucleotide sequence