Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_483 and Pf6N2E2_484 are separated by 320 nucleotides Pf6N2E2_484 and Pf6N2E2_485 are separated by 196 nucleotides
Pf6N2E2_483 - FIG146518: Zn-dependent hydrolases, including glyoxylases, at 549,289 to 550,152
_483
Pf6N2E2_484 - Aldose 1-epimerase, at 550,473 to 551,342
_484
Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819
_485
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1 at 549.533 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.548 kb on + strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.549 kb on - strand, within Pf6N2E2_483 at 549.596 kb on + strand, within Pf6N2E2_483 at 549.597 kb on - strand, within Pf6N2E2_483 at 549.597 kb on - strand, within Pf6N2E2_483 at 549.698 kb on + strand, within Pf6N2E2_483 at 549.911 kb on + strand, within Pf6N2E2_483 at 549.912 kb on - strand at 549.912 kb on - strand, within Pf6N2E2_483 at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.100 kb on + strand at 550.101 kb on - strand at 550.101 kb on - strand at 550.101 kb on - strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.106 kb on + strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.107 kb on - strand at 550.237 kb on + strand at 550.243 kb on - strand at 550.266 kb on + strand at 550.267 kb on - strand at 550.267 kb on - strand at 550.267 kb on - strand at 550.267 kb on - strand at 550.288 kb on - strand at 550.288 kb on - strand at 550.474 kb on + strand at 550.621 kb on + strand, within Pf6N2E2_484 at 550.622 kb on - strand, within Pf6N2E2_484 at 550.633 kb on + strand, within Pf6N2E2_484 at 550.633 kb on + strand, within Pf6N2E2_484 at 550.634 kb on - strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.659 kb on + strand, within Pf6N2E2_484 at 550.660 kb on - strand, within Pf6N2E2_484 at 550.660 kb on - strand, within Pf6N2E2_484 at 550.660 kb on - strand, within Pf6N2E2_484 at 550.671 kb on + strand, within Pf6N2E2_484 at 550.671 kb on + strand, within Pf6N2E2_484 at 550.671 kb on + strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.672 kb on - strand, within Pf6N2E2_484 at 550.743 kb on + strand, within Pf6N2E2_484 at 550.870 kb on + strand, within Pf6N2E2_484 at 550.871 kb on - strand, within Pf6N2E2_484 at 551.540 kb on + strand at 551.541 kb on - strand at 551.541 kb on - strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.582 kb on + strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.583 kb on - strand at 551.618 kb on + strand at 551.618 kb on + strand at 551.879 kb on + strand, within Pf6N2E2_485 at 551.948 kb on + strand, within Pf6N2E2_485 at 551.948 kb on + strand, within Pf6N2E2_485 at 551.949 kb on - strand, within Pf6N2E2_485 at 551.949 kb on - strand, within Pf6N2E2_485 at 552.006 kb on + strand, within Pf6N2E2_485 at 552.007 kb on - strand, within Pf6N2E2_485 at 552.007 kb on - strand, within Pf6N2E2_485 at 552.007 kb on - strand, within Pf6N2E2_485 at 552.042 kb on - strand, within Pf6N2E2_485 at 552.042 kb on - strand, within Pf6N2E2_485 at 552.050 kb on + strand, within Pf6N2E2_485 at 552.224 kb on + strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485 at 552.225 kb on - strand, within Pf6N2E2_485
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 549,533 + Pf6N2E2_483 0.28 +0.8 549,548 + Pf6N2E2_483 0.30 -0.2 549,548 + Pf6N2E2_483 0.30 -1.0 549,548 + Pf6N2E2_483 0.30 +0.3 549,548 + Pf6N2E2_483 0.30 +0.8 549,549 - Pf6N2E2_483 0.30 +0.8 549,549 - Pf6N2E2_483 0.30 -0.9 549,549 - Pf6N2E2_483 0.30 -1.7 549,596 + Pf6N2E2_483 0.36 -1.0 549,597 - Pf6N2E2_483 0.36 -0.8 549,597 - Pf6N2E2_483 0.36 +0.8 549,698 + Pf6N2E2_483 0.47 -1.2 549,911 + Pf6N2E2_483 0.72 +0.1 549,912 - +0.8 549,912 - Pf6N2E2_483 0.72 +0.8 550,100 + -0.9 550,100 + +0.8 550,100 + +0.3 550,100 + +0.8 550,100 + +0.8 550,101 - -0.7 550,101 - -2.0 550,101 - +0.8 550,106 + -0.0 550,106 + +0.8 550,106 + +0.8 550,106 + -0.2 550,106 + -1.0 550,107 - +0.8 550,107 - -2.1 550,107 - +0.8 550,107 - +0.8 550,237 + -0.2 550,243 - +0.8 550,266 + -0.8 550,267 - +0.8 550,267 - -0.7 550,267 - -1.3 550,267 - -0.7 550,288 - -0.2 550,288 - -2.2 550,474 + +0.8 550,621 + Pf6N2E2_484 0.17 +0.8 550,622 - Pf6N2E2_484 0.17 -0.2 550,633 + Pf6N2E2_484 0.18 +0.8 550,633 + Pf6N2E2_484 0.18 +0.8 550,634 - Pf6N2E2_484 0.19 +0.8 550,659 + Pf6N2E2_484 0.21 -1.4 550,659 + Pf6N2E2_484 0.21 +0.8 550,659 + Pf6N2E2_484 0.21 -0.2 550,659 + Pf6N2E2_484 0.21 +0.8 550,660 - Pf6N2E2_484 0.21 -0.2 550,660 - Pf6N2E2_484 0.21 -1.5 550,660 - Pf6N2E2_484 0.21 +0.8 550,671 + Pf6N2E2_484 0.23 -0.9 550,671 + Pf6N2E2_484 0.23 +0.8 550,671 + Pf6N2E2_484 0.23 -0.5 550,672 - Pf6N2E2_484 0.23 -1.3 550,672 - Pf6N2E2_484 0.23 +0.8 550,672 - Pf6N2E2_484 0.23 -0.2 550,672 - Pf6N2E2_484 0.23 -1.1 550,672 - Pf6N2E2_484 0.23 -0.2 550,672 - Pf6N2E2_484 0.23 -0.2 550,672 - Pf6N2E2_484 0.23 -1.1 550,672 - Pf6N2E2_484 0.23 +0.8 550,743 + Pf6N2E2_484 0.31 -0.7 550,870 + Pf6N2E2_484 0.46 +0.8 550,871 - Pf6N2E2_484 0.46 -1.2 551,540 + +0.8 551,541 - -0.3 551,541 - -1.4 551,582 + -0.7 551,582 + +0.8 551,582 + +0.8 551,582 + -1.0 551,582 + +0.8 551,582 + +0.8 551,582 + +0.8 551,583 - +0.8 551,583 - -0.2 551,583 - -0.2 551,583 - +0.8 551,583 - -1.7 551,583 - -0.3 551,618 + +0.8 551,618 + -1.1 551,879 + Pf6N2E2_485 0.27 -0.2 551,948 + Pf6N2E2_485 0.32 -0.7 551,948 + Pf6N2E2_485 0.32 +0.8 551,949 - Pf6N2E2_485 0.32 -0.2 551,949 - Pf6N2E2_485 0.32 -0.9 552,006 + Pf6N2E2_485 0.36 +0.8 552,007 - Pf6N2E2_485 0.37 -0.2 552,007 - Pf6N2E2_485 0.37 +0.8 552,007 - Pf6N2E2_485 0.37 +0.8 552,042 - Pf6N2E2_485 0.39 +0.8 552,042 - Pf6N2E2_485 0.39 -0.2 552,050 + Pf6N2E2_485 0.40 +0.8 552,224 + Pf6N2E2_485 0.53 -0.2 552,225 - Pf6N2E2_485 0.54 +0.8 552,225 - Pf6N2E2_485 0.54 +0.8 552,225 - Pf6N2E2_485 0.54 +0.8 552,225 - Pf6N2E2_485 0.54 +0.8 552,225 - Pf6N2E2_485 0.54 -1.6
Or see this region's nucleotide sequence