Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4720

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
5,456,041	+		Pf6N2E2_4718	0.68	-0.5
5,456,095	+		Pf6N2E2_4718	0.72	-1.2
5,456,443	+				-0.8
5,456,460	-				-0.9
5,456,460	-				+1.1
5,456,460	-				+0.1
5,456,586	+		Pf6N2E2_4719	0.38	-2.0
5,456,586	+		Pf6N2E2_4719	0.38	-0.5
5,456,586	+		Pf6N2E2_4719	0.38	+1.1
5,456,587	-		Pf6N2E2_4719	0.38	-2.8
5,456,587	-		Pf6N2E2_4719	0.38	+1.1
5,456,587	-		Pf6N2E2_4719	0.38	-0.5
5,456,587	-		Pf6N2E2_4719	0.38	+1.1
5,456,587	-		Pf6N2E2_4719	0.38	+1.1
5,456,587	-		Pf6N2E2_4719	0.38	+1.1
5,456,587	-		Pf6N2E2_4719	0.38	-0.5
5,456,587	-		Pf6N2E2_4719	0.38	+0.1
5,456,587	-		Pf6N2E2_4719	0.38	-2.2
5,456,658	+		Pf6N2E2_4719	0.60	+0.1
5,456,706	+		Pf6N2E2_4719	0.75	-0.5
5,456,785	+				+0.1
5,456,785	+				+0.1
5,456,785	+				+0.1
5,456,785	+				-1.5
5,456,786	-				-0.9
5,456,786	-				-1.5
5,456,786	-				+1.1
5,456,786	-				+0.1
5,456,867	+				-2.6
5,456,867	+				+1.1
5,456,868	-				+1.1
5,456,945	+				-1.5
5,457,167	+		Pf6N2E2_4720	0.13	-2.1
5,457,168	-		Pf6N2E2_4720	0.13	-3.0
5,457,168	-		Pf6N2E2_4720	0.13	+1.1
5,457,170	+		Pf6N2E2_4720	0.13	-2.3
5,457,171	-		Pf6N2E2_4720	0.13	-0.5
5,457,186	-		Pf6N2E2_4720	0.13	-0.5
5,457,209	+		Pf6N2E2_4720	0.14	+0.1
5,457,210	-		Pf6N2E2_4720	0.14	-1.9
5,457,218	+		Pf6N2E2_4720	0.14	-2.3
5,457,218	+		Pf6N2E2_4720	0.14	+1.1
5,457,219	-		Pf6N2E2_4720	0.14	+0.1
5,457,227	-		Pf6N2E2_4720	0.15	-1.7
5,457,275	+		Pf6N2E2_4720	0.16	+1.1
5,457,275	+		Pf6N2E2_4720	0.16	-0.7
5,457,275	+		Pf6N2E2_4720	0.16	+1.1
5,457,276	-		Pf6N2E2_4720	0.16	+0.1
5,457,276	-		Pf6N2E2_4720	0.16	+0.1
5,457,276	-		Pf6N2E2_4720	0.16	-3.2
5,457,276	-		Pf6N2E2_4720	0.16	+1.1
5,457,276	-		Pf6N2E2_4720	0.16	+1.1
5,457,276	-		Pf6N2E2_4720	0.16	-0.5
5,457,281	+		Pf6N2E2_4720	0.16	-1.1
5,457,281	+		Pf6N2E2_4720	0.16	-2.5
5,457,281	+		Pf6N2E2_4720	0.16	-2.2
5,457,281	+		Pf6N2E2_4720	0.16	+1.1
5,457,281	+		Pf6N2E2_4720	0.16	-0.5
5,457,282	-		Pf6N2E2_4720	0.16	+0.1
5,457,282	-		Pf6N2E2_4720	0.16	+1.1
5,457,460	-		Pf6N2E2_4720	0.22	-1.1
5,457,530	+		Pf6N2E2_4720	0.25	+1.1
5,457,541	+		Pf6N2E2_4720	0.25	-2.2
5,457,541	+		Pf6N2E2_4720	0.25	-1.7
5,457,542	-		Pf6N2E2_4720	0.25	+1.1
5,457,542	-		Pf6N2E2_4720	0.25	-1.6
5,457,731	+		Pf6N2E2_4720	0.31	+0.1
5,457,731	+		Pf6N2E2_4720	0.31	-2.3
5,457,731	+		Pf6N2E2_4720	0.31	-1.5
5,457,731	+		Pf6N2E2_4720	0.31	-0.5
5,457,731	+		Pf6N2E2_4720	0.31	-0.9
5,457,732	-		Pf6N2E2_4720	0.31	+1.1
5,457,732	-		Pf6N2E2_4720	0.31	+0.1
5,457,732	-		Pf6N2E2_4720	0.31	-0.7
5,458,155	+		Pf6N2E2_4720	0.45	+0.1
5,458,156	-		Pf6N2E2_4720	0.45	-1.8
5,458,181	+		Pf6N2E2_4720	0.46	-1.7
5,458,182	-		Pf6N2E2_4720	0.46	+0.1
5,458,182	-		Pf6N2E2_4720	0.46	+1.1
5,458,196	-		Pf6N2E2_4720	0.47	-0.2
5,458,568	+		Pf6N2E2_4720	0.59	-1.5
5,458,629	+		Pf6N2E2_4720	0.61	+0.1
5,458,630	-		Pf6N2E2_4720	0.61	-1.6
5,458,709	+		Pf6N2E2_4720	0.64	-0.9
5,458,709	+		Pf6N2E2_4720	0.64	-0.5
5,458,710	-		Pf6N2E2_4720	0.64	-2.2
5,458,710	-		Pf6N2E2_4720	0.64	+1.1
5,458,710	-		Pf6N2E2_4720	0.64	-1.9
5,459,027	+		Pf6N2E2_4720	0.74	-0.9
5,459,028	-		Pf6N2E2_4720	0.74	-2.7
5,459,028	-		Pf6N2E2_4720	0.74	+0.1
5,459,028	-		Pf6N2E2_4720	0.74	-2.4
5,459,060	+		Pf6N2E2_4720	0.75	+1.1
5,459,060	+		Pf6N2E2_4720	0.75	+1.1
5,459,060	+		Pf6N2E2_4720	0.75	-2.1
5,459,060	+		Pf6N2E2_4720	0.75	+1.1
5,459,060	+		Pf6N2E2_4720	0.75	-2.2
5,459,061	-		Pf6N2E2_4720	0.75	+0.1
5,459,061	-		Pf6N2E2_4720	0.75	-2.0
5,459,249	+		Pf6N2E2_4720	0.82	+0.1
5,459,249	+		Pf6N2E2_4720	0.82	+0.1
5,459,273	+		Pf6N2E2_4720	0.82	+1.1
5,459,318	+		Pf6N2E2_4720	0.84	+0.1
5,459,318	+		Pf6N2E2_4720	0.84	-0.9
5,459,318	+		Pf6N2E2_4720	0.84	+0.1
5,459,319	-		Pf6N2E2_4720	0.84	-1.5
5,459,319	-		Pf6N2E2_4720	0.84	-0.5
5,459,334	-		Pf6N2E2_4720	0.84	+1.1
5,459,355	+		Pf6N2E2_4720	0.85	-0.5
5,459,355	+		Pf6N2E2_4720	0.85	-3.2
5,459,355	+		Pf6N2E2_4720	0.85	+1.1
5,459,355	+		Pf6N2E2_4720	0.85	+1.1
5,459,355	+		Pf6N2E2_4720	0.85	-1.1
5,459,355	+		Pf6N2E2_4720	0.85	+1.1
5,459,355	+		Pf6N2E2_4720	0.85	+1.1
5,459,356	-		Pf6N2E2_4720	0.85	+1.1
5,459,356	-		Pf6N2E2_4720	0.85	-0.5
5,459,356	-		Pf6N2E2_4720	0.85	-2.0
5,459,356	-		Pf6N2E2_4720	0.85	-2.1
5,459,442	+		Pf6N2E2_4720	0.88	+0.1
5,459,636	+				+0.1
5,459,636	+				-1.2
5,459,636	+				-2.0
5,459,636	+				-0.5
5,459,636	+				-0.9
5,459,637	-				-2.8
5,459,637	-				+1.1
5,459,797	+				-0.8
5,459,920	+				+1.1
5,459,957	+				-0.5
5,459,957	+				+0.1
5,459,958	-				+0.1
5,459,958	-				+0.1
5,460,384	-		Pf6N2E2_4721	0.70	-2.0
5,460,384	-		Pf6N2E2_4721	0.70	-1.9
5,460,384	-		Pf6N2E2_4721	0.70	+1.1
5,460,384	-		Pf6N2E2_4721	0.70	-0.5
5,460,384	-		Pf6N2E2_4721	0.70	-2.2
5,460,384	-		Pf6N2E2_4721	0.70	+1.1
5,460,384	-		Pf6N2E2_4721	0.70	-2.7
5,460,582	+				-1.9
5,460,583	-				+0.1
5,460,613	+				+0.1
5,460,674	+				-1.7
5,460,675	-				+0.1
5,460,728	-				+1.1
5,460,728	-				+1.1
5,460,772	+				+0.1