Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4567

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
5,298,060	+		Pf6N2E2_4566	0.42	+0.6
5,298,060	+		Pf6N2E2_4566	0.42	+1.1
5,298,061	-		Pf6N2E2_4566	0.43	+0.1
5,298,061	-		Pf6N2E2_4566	0.43	-0.5
5,298,061	-		Pf6N2E2_4566	0.43	-0.5
5,298,132	+		Pf6N2E2_4566	0.48	-1.1
5,298,133	-		Pf6N2E2_4566	0.49	+1.1
5,298,133	-		Pf6N2E2_4566	0.49	+1.1
5,298,237	+		Pf6N2E2_4566	0.57	+0.1
5,298,237	+		Pf6N2E2_4566	0.57	-0.2
5,298,430	-		Pf6N2E2_4566	0.73	+1.1
5,298,430	-		Pf6N2E2_4566	0.73	+0.1
5,298,442	-		Pf6N2E2_4566	0.74	+1.1
5,298,659	+				+0.1
5,298,679	-				+1.1
5,298,777	+				-1.9
5,298,777	+				+1.1
5,298,777	+				-0.5
5,298,777	+				+1.1
5,298,778	-				+0.1
5,298,778	-				-0.6
5,298,778	-				-0.5
5,298,778	-				+1.1
5,298,778	-				+1.1
5,298,778	-				-0.5
5,298,778	-				-0.9
5,298,780	-				-0.6
5,298,780	-				+1.1
5,298,780	-				-2.5
5,298,780	-				-0.5
5,298,780	-				+1.1
5,298,780	-				-0.5
5,299,005	+		Pf6N2E2_4567	0.27	+1.1
5,299,005	+		Pf6N2E2_4567	0.27	-0.5
5,299,005	+		Pf6N2E2_4567	0.27	-0.5
5,299,006	-		Pf6N2E2_4567	0.27	+1.1
5,299,006	-		Pf6N2E2_4567	0.27	+0.1
5,299,006	-		Pf6N2E2_4567	0.27	-0.5
5,299,182	+		Pf6N2E2_4567	0.60	-1.4
5,299,183	-		Pf6N2E2_4567	0.60	+0.1
5,299,445	+				+1.1
5,299,446	-				-0.1
5,299,470	+				+0.1
5,299,470	+				+0.1
5,299,471	-				+1.1
5,299,471	-				+0.1
5,299,471	-				+1.1
5,299,545	+				-0.7
5,299,545	+				-0.7
5,299,545	+				+0.1
5,299,545	+				+1.1
5,299,546	-				-0.9
5,299,546	-				+0.4
5,299,546	-				-0.5
5,299,546	-				+0.1
5,299,574	+				+2.1
5,299,574	+				+1.1
5,299,574	+				+0.1
5,299,574	+				+0.1
5,299,574	+				-1.5
5,299,575	-				+1.1
5,299,575	-				+1.1
5,299,575	-				-0.5
5,299,575	-				-1.2
5,299,575	-				-1.2
5,299,678	+		Pf6N2E2_4568	0.11	+1.1
5,299,678	+		Pf6N2E2_4568	0.11	-0.6
5,299,678	+		Pf6N2E2_4568	0.11	-2.2
5,299,678	+		Pf6N2E2_4568	0.11	+0.1
5,299,678	+		Pf6N2E2_4568	0.11	+0.1
5,299,678	+		Pf6N2E2_4568	0.11	+0.1
5,299,679	-		Pf6N2E2_4568	0.11	-0.5
5,299,679	-		Pf6N2E2_4568	0.11	+2.1
5,299,679	-		Pf6N2E2_4568	0.11	-0.5
5,299,679	-		Pf6N2E2_4568	0.11	+0.1
5,299,679	-		Pf6N2E2_4568	0.11	-0.5
5,299,679	-		Pf6N2E2_4568	0.11	+0.1
5,299,771	+		Pf6N2E2_4568	0.22	-0.5
5,299,774	+		Pf6N2E2_4568	0.22	-2.2
5,299,774	+		Pf6N2E2_4568	0.22	+1.1
5,299,990	+		Pf6N2E2_4568	0.47	+1.1
5,299,991	-		Pf6N2E2_4568	0.47	-0.5
5,299,991	-		Pf6N2E2_4568	0.47	-1.2
5,299,991	-		Pf6N2E2_4568	0.47	+0.1
5,300,050	+		Pf6N2E2_4568	0.54	-0.8
5,300,050	+		Pf6N2E2_4568	0.54	-1.2
5,300,050	+		Pf6N2E2_4568	0.54	+0.7
5,300,050	+		Pf6N2E2_4568	0.54	-0.7
5,300,050	+		Pf6N2E2_4568	0.54	-2.0
5,300,050	+		Pf6N2E2_4568	0.54	+1.1
5,300,050	+		Pf6N2E2_4568	0.54	-0.7
5,300,050	+		Pf6N2E2_4568	0.54	-0.5
5,300,050	+		Pf6N2E2_4568	0.54	+0.1
5,300,051	-		Pf6N2E2_4568	0.54	+1.1
5,300,051	-		Pf6N2E2_4568	0.54	+1.1
5,300,051	-		Pf6N2E2_4568	0.54	-0.5
5,300,051	-		Pf6N2E2_4568	0.54	+1.1
5,300,051	-		Pf6N2E2_4568	0.54	-0.9
5,300,051	-		Pf6N2E2_4568	0.54	+1.1
5,300,051	-		Pf6N2E2_4568	0.54	+0.1
5,300,051	-		Pf6N2E2_4568	0.54	+1.1
5,300,051	-		Pf6N2E2_4568	0.54	-0.2
5,300,051	-		Pf6N2E2_4568	0.54	+0.1
5,300,074	+		Pf6N2E2_4568	0.57	+0.1
5,300,074	+		Pf6N2E2_4568	0.57	-1.6
5,300,152	+		Pf6N2E2_4568	0.66	-0.5
5,300,152	+		Pf6N2E2_4568	0.66	+0.1
5,300,155	+		Pf6N2E2_4568	0.66	-0.5
5,300,155	+		Pf6N2E2_4568	0.66	+0.1
5,300,155	+		Pf6N2E2_4568	0.66	+1.1
5,300,155	+		Pf6N2E2_4568	0.66	+1.1
5,300,156	-		Pf6N2E2_4568	0.66	+0.0
5,300,156	-		Pf6N2E2_4568	0.66	+0.1
5,300,156	-		Pf6N2E2_4568	0.66	-0.9
5,300,156	-		Pf6N2E2_4568	0.66	+0.1
5,300,156	-		Pf6N2E2_4568	0.66	+1.1
5,300,253	+		Pf6N2E2_4568	0.77	-0.5
5,300,380	+				+0.1
5,300,380	+				-0.5
5,300,398	+				-1.3