Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4458

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
5,189,248	-		Pf6N2E2_4456	0.54	+0.9
5,189,258	-		Pf6N2E2_4456	0.56	-0.9
5,189,258	-		Pf6N2E2_4456	0.56	-0.5
5,189,379	+		Pf6N2E2_4456	0.74	+0.1
5,189,379	+		Pf6N2E2_4456	0.74	-0.9
5,189,379	+		Pf6N2E2_4456	0.74	+0.1
5,189,379	+		Pf6N2E2_4456	0.74	+1.1
5,189,379	+		Pf6N2E2_4456	0.74	-0.6
5,189,380	-		Pf6N2E2_4456	0.75	+1.1
5,189,380	-		Pf6N2E2_4456	0.75	-1.5
5,189,570	+				+0.3
5,189,570	+				-0.5
5,189,570	+				+1.1
5,189,570	+				-0.4
5,189,571	-				-0.7
5,189,630	+		Pf6N2E2_4457	0.13	-2.4
5,189,630	+		Pf6N2E2_4457	0.13	+0.1
5,189,631	-		Pf6N2E2_4457	0.13	-0.5
5,189,651	+		Pf6N2E2_4457	0.16	+0.1
5,189,652	-		Pf6N2E2_4457	0.16	+0.1
5,189,652	-		Pf6N2E2_4457	0.16	-0.9
5,189,673	+		Pf6N2E2_4457	0.19	-1.3
5,189,673	+		Pf6N2E2_4457	0.19	+0.1
5,189,674	-		Pf6N2E2_4457	0.19	+1.1
5,189,912	+		Pf6N2E2_4457	0.54	-0.4
5,189,912	+		Pf6N2E2_4457	0.54	+0.7
5,190,044	+		Pf6N2E2_4457	0.74	-0.7
5,190,045	-		Pf6N2E2_4457	0.74	-0.7
5,190,045	-		Pf6N2E2_4457	0.74	-0.5
5,190,129	+		Pf6N2E2_4457	0.86	-0.9
5,190,129	+		Pf6N2E2_4457	0.86	+0.1
5,190,130	-		Pf6N2E2_4457	0.86	+1.1
5,190,130	-		Pf6N2E2_4457	0.86	+0.7
5,190,130	-		Pf6N2E2_4457	0.86	+1.1
5,190,215	+				-0.1
5,190,216	-				-1.2
5,190,216	-				-2.5
5,190,377	+		Pf6N2E2_4458	0.17	-1.3
5,190,378	-		Pf6N2E2_4458	0.17	+1.1
5,190,378	-		Pf6N2E2_4458	0.17	-0.5
5,190,378	-		Pf6N2E2_4458	0.17	+1.1
5,190,378	-		Pf6N2E2_4458	0.17	-2.3
5,190,378	-		Pf6N2E2_4458	0.17	+1.1
5,190,378	-		Pf6N2E2_4458	0.17	-0.5
5,190,494	+		Pf6N2E2_4458	0.32	-0.9
5,190,495	-		Pf6N2E2_4458	0.32	-1.5
5,190,665	+		Pf6N2E2_4458	0.54	+1.1
5,190,666	-		Pf6N2E2_4458	0.54	+1.1
5,190,666	-		Pf6N2E2_4458	0.54	-0.9
5,190,666	-		Pf6N2E2_4458	0.54	+1.1
5,190,677	+		Pf6N2E2_4458	0.55	+0.1
5,191,190	+				-1.5
5,191,191	-				-0.9
5,191,239	-				+0.1
5,191,239	-				-2.5
5,191,239	-				-0.5
5,191,244	+				-1.9
5,191,244	+				-1.4
5,191,244	+				-2.3
5,191,244	+				+0.1
5,191,244	+				+0.1
5,191,244	+				-0.5
5,191,244	+				+1.1
5,191,244	+				+0.1
5,191,245	-				+0.1
5,191,245	-				+1.1
5,191,572	-		Pf6N2E2_4459	0.41	+1.1
5,191,822	+		Pf6N2E2_4459	0.76	+0.6
5,191,936	+				-1.3
5,191,936	+				+0.1
5,191,936	+				-0.9
5,191,936	+				-1.2
5,191,936	+				-0.5
5,191,936	+				-0.3
5,191,936	+				+0.1
5,191,936	+				+0.1
5,191,936	+				-0.5
5,191,936	+				+1.1
5,191,936	+				-0.9
5,191,936	+				+0.1
5,191,936	+				+1.1
5,191,936	+				+0.1
5,191,936	+				-0.3
5,191,936	+				-1.5
5,191,936	+				+0.1
5,191,936	+				-1.5
5,191,936	+				-0.5
5,191,936	+				-0.5
5,191,936	+				+1.1
5,191,936	+				+0.1
5,191,936	+				+1.1
5,191,937	-				-0.4
5,191,937	-				-1.3
5,191,937	-				+1.1
5,191,937	-				-0.9
5,191,937	-				+1.1
5,191,937	-				+1.1
5,191,937	-				+0.1
5,191,937	-				+0.1
5,191,937	-				-1.7
5,191,937	-				-1.3
5,191,937	-				+0.1
5,191,937	-				-0.9
5,191,937	-				-1.7
5,191,937	-				-0.7
5,191,937	-				-1.1
5,191,937	-				-0.9
5,191,937	-				+1.1
5,191,940	+				-1.3
5,191,940	+				+1.1
5,191,999	+				+0.1
5,191,999	+				-0.1
5,191,999	+				-0.5
5,192,000	-				+0.1
5,192,000	-				+0.3
5,192,000	-				-1.3
5,192,000	-				+0.1
5,192,000	-				-0.5
5,192,009	+				+1.1
5,192,009	+				-0.9
5,192,009	+				-0.5
5,192,009	+				+1.1
5,192,009	+				-0.9
5,192,009	+				+0.5
5,192,010	-				+1.1
5,192,023	+				+1.1