Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_442 and Pf6N2E2_443 are separated by 0 nucleotides Pf6N2E2_443 and Pf6N2E2_444 are separated by 126 nucleotides Pf6N2E2_444 and Pf6N2E2_445 are separated by 234 nucleotides Pf6N2E2_445 and Pf6N2E2_446 are separated by 200 nucleotides
Pf6N2E2_442 - FIG00962345: hypothetical protein, at 506,038 to 506,268
_442
Pf6N2E2_443 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 506,269 to 506,550
_443
Pf6N2E2_444 - hypothetical protein, at 506,677 to 506,892
_444
Pf6N2E2_445 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 507,127 to 507,966
_445
Pf6N2E2_446 - Glutathione reductase (EC 1.8.1.7), at 508,167 to 509,525
_446
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.223 kb on + strand, within Pf6N2E2_442 at 506.270 kb on + strand at 506.270 kb on + strand at 506.270 kb on + strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.414 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.484 kb on - strand, within Pf6N2E2_443 at 506.526 kb on + strand at 506.526 kb on + strand at 506.527 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.615 kb on + strand at 506.615 kb on + strand at 506.616 kb on - strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.679 kb on - strand at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.895 kb on - strand at 506.895 kb on - strand at 506.895 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.930 kb on - strand at 506.955 kb on + strand at 506.955 kb on + strand at 507.029 kb on + strand at 507.029 kb on + strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.062 kb on + strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.063 kb on - strand at 507.082 kb on + strand at 507.082 kb on + strand at 507.082 kb on + strand at 507.083 kb on - strand at 507.083 kb on - strand at 507.124 kb on + strand at 507.124 kb on + strand at 507.124 kb on + strand at 507.125 kb on - strand at 507.125 kb on - strand at 507.125 kb on - strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.126 kb on + strand at 507.127 kb on - strand at 507.127 kb on - strand at 507.127 kb on - strand at 507.186 kb on + strand at 507.187 kb on - strand at 507.187 kb on - strand at 507.334 kb on + strand, within Pf6N2E2_445 at 507.334 kb on + strand, within Pf6N2E2_445 at 507.335 kb on - strand, within Pf6N2E2_445 at 507.376 kb on + strand, within Pf6N2E2_445 at 507.421 kb on + strand, within Pf6N2E2_445 at 507.548 kb on + strand, within Pf6N2E2_445 at 507.548 kb on + strand, within Pf6N2E2_445 at 507.571 kb on + strand, within Pf6N2E2_445 at 507.571 kb on + strand, within Pf6N2E2_445 at 507.635 kb on - strand, within Pf6N2E2_445 at 507.673 kb on + strand, within Pf6N2E2_445 at 507.673 kb on + strand, within Pf6N2E2_445 at 507.746 kb on - strand, within Pf6N2E2_445 at 507.862 kb on + strand, within Pf6N2E2_445 at 507.862 kb on + strand, within Pf6N2E2_445 at 507.863 kb on - strand, within Pf6N2E2_445 at 507.863 kb on - strand, within Pf6N2E2_445 at 507.907 kb on + strand at 507.908 kb on - strand at 507.908 kb on - strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.944 kb on - strand at 507.944 kb on - strand at 507.944 kb on - strand at 507.961 kb on + strand at 508.137 kb on + strand at 508.138 kb on - strand at 508.138 kb on - strand at 508.138 kb on - strand at 508.138 kb on - strand at 508.138 kb on - strand at 508.162 kb on + strand at 508.162 kb on + strand at 508.162 kb on + strand at 508.163 kb on - strand at 508.163 kb on - strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.188 kb on + strand at 508.189 kb on - strand at 508.189 kb on - strand at 508.189 kb on - strand at 508.189 kb on - strand at 508.189 kb on - strand at 508.217 kb on - strand at 508.329 kb on + strand, within Pf6N2E2_446 at 508.330 kb on - strand, within Pf6N2E2_446 at 508.341 kb on + strand at 508.341 kb on + strand, within Pf6N2E2_446 at 508.371 kb on + strand, within Pf6N2E2_446 at 508.372 kb on - strand, within Pf6N2E2_446 at 508.458 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.938 kb on + strand, within Pf6N2E2_446 at 508.938 kb on + strand, within Pf6N2E2_446 at 508.938 kb on + strand, within Pf6N2E2_446 at 508.939 kb on - strand, within Pf6N2E2_446
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 506,223 + Pf6N2E2_442 0.80 +0.8 506,270 + +0.8 506,270 + -0.2 506,270 + +0.8 506,271 - -0.2 506,271 - -0.2 506,271 - +0.8 506,414 + Pf6N2E2_443 0.51 -0.2 506,483 + Pf6N2E2_443 0.76 -0.2 506,483 + Pf6N2E2_443 0.76 +0.8 506,484 - Pf6N2E2_443 0.76 -0.7 506,526 + -1.3 506,526 + -0.2 506,527 - +0.8 506,591 - +0.8 506,591 - +0.8 506,591 - +0.8 506,615 + +0.8 506,615 + +0.8 506,616 - +0.8 506,659 + +0.8 506,659 + +0.8 506,659 + +0.8 506,659 + -0.2 506,659 + -0.2 506,660 - -0.2 506,660 - -0.2 506,660 - +0.8 506,662 + +0.4 506,662 + +0.8 506,662 + -1.4 506,662 + -1.2 506,679 - -0.5 506,819 + Pf6N2E2_444 0.66 -0.6 506,819 + Pf6N2E2_444 0.66 -0.2 506,819 + Pf6N2E2_444 0.66 -2.0 506,819 + Pf6N2E2_444 0.66 +0.8 506,820 - Pf6N2E2_444 0.66 +0.8 506,820 - Pf6N2E2_444 0.66 -0.2 506,820 - Pf6N2E2_444 0.66 -0.9 506,894 + +0.8 506,894 + -1.5 506,894 + +0.8 506,894 + +0.8 506,894 + -0.5 506,894 + +0.8 506,895 - +0.8 506,895 - -0.2 506,895 - +0.8 506,930 - -2.1 506,930 - -0.8 506,930 - -0.9 506,930 - -0.2 506,930 - -0.6 506,955 + -0.7 506,955 + -0.2 507,029 + +0.8 507,029 + -2.3 507,030 - +0.8 507,030 - +0.8 507,030 - +0.8 507,030 - +0.8 507,062 + +0.8 507,063 - -0.2 507,063 - -0.2 507,063 - +0.8 507,063 - +0.8 507,063 - +0.8 507,082 + -0.5 507,082 + -0.2 507,082 + +0.8 507,083 - -1.7 507,083 - -1.1 507,124 + -3.2 507,124 + +0.8 507,124 + +0.8 507,125 - +0.8 507,125 - +0.8 507,125 - +0.8 507,126 + +0.8 507,126 + +0.3 507,126 + +0.8 507,126 + -0.0 507,126 + +0.8 507,127 - -2.4 507,127 - -0.2 507,127 - -2.2 507,186 + +0.8 507,187 - +0.8 507,187 - -1.2 507,334 + Pf6N2E2_445 0.25 -0.2 507,334 + Pf6N2E2_445 0.25 -3.1 507,335 - Pf6N2E2_445 0.25 +0.8 507,376 + Pf6N2E2_445 0.30 -0.2 507,421 + Pf6N2E2_445 0.35 +0.8 507,548 + Pf6N2E2_445 0.50 +0.8 507,548 + Pf6N2E2_445 0.50 -2.6 507,571 + Pf6N2E2_445 0.53 -0.2 507,571 + Pf6N2E2_445 0.53 +0.8 507,635 - Pf6N2E2_445 0.60 -2.7 507,673 + Pf6N2E2_445 0.65 -1.3 507,673 + Pf6N2E2_445 0.65 +0.8 507,746 - Pf6N2E2_445 0.74 -3.0 507,862 + Pf6N2E2_445 0.88 +0.8 507,862 + Pf6N2E2_445 0.88 +0.8 507,863 - Pf6N2E2_445 0.88 -1.2 507,863 - Pf6N2E2_445 0.88 +0.8 507,907 + -2.7 507,908 - +0.8 507,908 - +0.8 507,943 + +0.8 507,943 + +0.8 507,943 + +0.8 507,943 + -1.5 507,944 - +0.8 507,944 - +0.8 507,944 - -0.2 507,961 + -1.5 508,137 + -0.2 508,138 - +1.8 508,138 - +0.8 508,138 - +0.2 508,138 - +0.8 508,138 - -0.2 508,162 + +0.8 508,162 + -2.6 508,162 + +0.8 508,163 - -0.2 508,163 - +0.8 508,188 + -0.2 508,188 + -1.2 508,188 + -0.2 508,188 + -0.2 508,188 + +0.8 508,188 + +0.8 508,188 + -1.2 508,188 + -0.7 508,188 + +0.8 508,188 + +0.0 508,188 + +0.8 508,188 + +0.8 508,189 - -1.2 508,189 - +0.8 508,189 - +0.8 508,189 - -1.0 508,189 - -0.2 508,217 - -0.2 508,329 + Pf6N2E2_446 0.12 +0.8 508,330 - Pf6N2E2_446 0.12 +0.8 508,341 + +0.8 508,341 + Pf6N2E2_446 0.13 -0.7 508,371 + Pf6N2E2_446 0.15 +0.8 508,372 - Pf6N2E2_446 0.15 +0.8 508,458 + Pf6N2E2_446 0.21 -0.2 508,750 + Pf6N2E2_446 0.43 +0.8 508,750 + Pf6N2E2_446 0.43 -0.5 508,750 + Pf6N2E2_446 0.43 +0.8 508,750 + Pf6N2E2_446 0.43 -1.8 508,750 + Pf6N2E2_446 0.43 +0.8 508,750 + Pf6N2E2_446 0.43 +0.8 508,750 + Pf6N2E2_446 0.43 +0.8 508,750 + Pf6N2E2_446 0.43 +0.8 508,750 + Pf6N2E2_446 0.43 -2.7 508,750 + Pf6N2E2_446 0.43 +0.6 508,750 + Pf6N2E2_446 0.43 +0.8 508,751 - Pf6N2E2_446 0.43 -1.0 508,751 - Pf6N2E2_446 0.43 +0.8 508,751 - Pf6N2E2_446 0.43 -0.7 508,751 - Pf6N2E2_446 0.43 -0.2 508,751 - Pf6N2E2_446 0.43 -1.2 508,751 - Pf6N2E2_446 0.43 +0.8 508,751 - Pf6N2E2_446 0.43 -0.7 508,938 + Pf6N2E2_446 0.57 +0.8 508,938 + Pf6N2E2_446 0.57 +0.8 508,938 + Pf6N2E2_446 0.57 +0.8 508,939 - Pf6N2E2_446 0.57 +0.8
Or see this region's nucleotide sequence