Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3380

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
3,909,410	+				+1.0
3,909,410	+				+0.0
3,909,410	+				-1.6
3,909,410	+				+1.0
3,909,410	+				-1.0
3,909,410	+				+1.0
3,909,410	+				+0.0
3,909,410	+				-0.6
3,909,410	+				-0.6
3,909,410	+				+1.0
3,909,411	-		Pf6N2E2_3379	0.10	+1.0
3,909,411	-		Pf6N2E2_3379	0.10	-0.6
3,909,411	-		Pf6N2E2_3379	0.10	-0.6
3,909,411	-		Pf6N2E2_3379	0.10	+1.0
3,909,411	-		Pf6N2E2_3379	0.10	+0.0
3,909,411	-		Pf6N2E2_3379	0.10	+0.0
3,909,417	+		Pf6N2E2_3379	0.11	+1.0
3,909,417	+		Pf6N2E2_3379	0.11	-0.6
3,909,417	+		Pf6N2E2_3379	0.11	+0.0
3,909,417	+		Pf6N2E2_3379	0.11	+0.0
3,909,417	+		Pf6N2E2_3379	0.11	+1.0
3,909,417	+		Pf6N2E2_3379	0.11	-1.4
3,909,417	+		Pf6N2E2_3379	0.11	-1.4
3,909,417	+		Pf6N2E2_3379	0.11	+1.0
3,909,418	-		Pf6N2E2_3379	0.11	+1.0
3,909,418	-		Pf6N2E2_3379	0.11	+1.0
3,909,418	-		Pf6N2E2_3379	0.11	+1.0
3,909,418	-		Pf6N2E2_3379	0.11	-1.0
3,909,418	-		Pf6N2E2_3379	0.11	+1.0
3,909,418	-		Pf6N2E2_3379	0.11	+0.6
3,909,473	+		Pf6N2E2_3379	0.18	+1.0
3,909,473	+		Pf6N2E2_3379	0.18	+1.0
3,909,473	+		Pf6N2E2_3379	0.18	-2.0
3,909,473	+		Pf6N2E2_3379	0.18	+0.4
3,909,473	+		Pf6N2E2_3379	0.18	-1.0
3,909,473	+		Pf6N2E2_3379	0.18	+0.0
3,909,474	-		Pf6N2E2_3379	0.18	-0.7
3,909,474	-		Pf6N2E2_3379	0.18	-0.6
3,909,474	-		Pf6N2E2_3379	0.18	-2.5
3,909,474	-		Pf6N2E2_3379	0.18	+1.0
3,909,527	+		Pf6N2E2_3379	0.25	-2.9
3,909,527	+		Pf6N2E2_3379	0.25	+1.0
3,909,527	+		Pf6N2E2_3379	0.25	+1.0
3,909,527	+		Pf6N2E2_3379	0.25	-1.4
3,909,528	-		Pf6N2E2_3379	0.25	+1.0
3,909,528	-		Pf6N2E2_3379	0.25	-0.6
3,909,528	-		Pf6N2E2_3379	0.25	+0.0
3,909,528	-		Pf6N2E2_3379	0.25	-0.4
3,909,528	-		Pf6N2E2_3379	0.25	+0.0
3,909,528	-		Pf6N2E2_3379	0.25	-1.0
3,909,528	-		Pf6N2E2_3379	0.25	-1.1
3,909,606	+		Pf6N2E2_3379	0.35	+1.0
3,909,690	-		Pf6N2E2_3379	0.46	+0.0
3,909,762	-		Pf6N2E2_3379	0.56	-0.7
3,909,762	-		Pf6N2E2_3379	0.56	+1.0
3,909,764	+		Pf6N2E2_3379	0.56	+1.0
3,909,764	+		Pf6N2E2_3379	0.56	+1.0
3,909,765	-		Pf6N2E2_3379	0.56	-0.6
3,909,765	-		Pf6N2E2_3379	0.56	-1.8
3,909,884	+		Pf6N2E2_3379	0.72	-1.9
3,909,884	+		Pf6N2E2_3379	0.72	-1.0
3,909,884	+		Pf6N2E2_3379	0.72	-1.3
3,909,884	+		Pf6N2E2_3379	0.72	+1.0
3,909,884	+		Pf6N2E2_3379	0.72	+1.0
3,909,884	+		Pf6N2E2_3379	0.72	+1.0
3,909,885	-		Pf6N2E2_3379	0.72	+1.0
3,909,885	-		Pf6N2E2_3379	0.72	-0.6
3,909,885	-		Pf6N2E2_3379	0.72	-1.3
3,909,885	-		Pf6N2E2_3379	0.72	+0.0
3,909,885	-		Pf6N2E2_3379	0.72	+1.0
3,909,885	-		Pf6N2E2_3379	0.72	-2.6
3,909,885	-		Pf6N2E2_3379	0.72	-1.6
3,909,885	-		Pf6N2E2_3379	0.72	-2.2
3,910,101	+				+1.0
3,910,143	-				+1.0
3,910,143	-				-0.6
3,910,177	-				+1.0
3,910,189	+				-0.9
3,910,189	+				+1.0
3,910,189	+				+1.0
3,910,189	+				+1.0
3,910,189	+				-1.0
3,910,189	+				-1.2
3,910,190	-				-0.1
3,910,190	-				+0.0
3,910,190	-				-0.9
3,910,190	-				+0.7
3,910,221	-				+1.0
3,910,221	-				+0.0
3,910,221	-				-0.6
3,910,349	-				-0.4
3,910,385	+				+1.0
3,910,385	+				+1.0
3,910,386	-				+1.0
3,910,386	-				+0.0
3,910,386	-				+0.0
3,910,386	-				-1.0
3,910,386	-				-0.2
3,910,440	+				+1.0
3,910,440	+				-0.9
3,910,440	+				+0.0
3,910,441	-				-0.1
3,910,540	+		Pf6N2E2_3380	0.11	+0.0
3,910,541	-		Pf6N2E2_3380	0.11	+0.0
3,910,541	-		Pf6N2E2_3380	0.11	-1.2
3,910,541	-		Pf6N2E2_3380	0.11	-0.6
3,910,541	-		Pf6N2E2_3380	0.11	-0.4
3,910,574	+		Pf6N2E2_3380	0.13	-1.0
3,910,586	+		Pf6N2E2_3380	0.13	+0.0
3,910,826	+		Pf6N2E2_3380	0.27	-1.1
3,910,827	-		Pf6N2E2_3380	0.27	+1.0
3,911,078	+		Pf6N2E2_3380	0.42	-1.0
3,911,078	+		Pf6N2E2_3380	0.42	+1.0
3,911,078	+		Pf6N2E2_3380	0.42	-1.0
3,911,079	-		Pf6N2E2_3380	0.42	+1.0
3,911,079	-		Pf6N2E2_3380	0.42	+1.0
3,911,079	-		Pf6N2E2_3380	0.42	-1.0
3,911,079	-		Pf6N2E2_3380	0.42	-1.7
3,911,079	-		Pf6N2E2_3380	0.42	+1.0
3,911,331	+		Pf6N2E2_3380	0.57	+0.0
3,911,331	+		Pf6N2E2_3380	0.57	+0.6
3,911,332	-		Pf6N2E2_3380	0.57	+1.0
3,911,332	-		Pf6N2E2_3380	0.57	+0.0
3,911,393	+		Pf6N2E2_3380	0.61	-2.4
3,911,393	+		Pf6N2E2_3380	0.61	+1.0
3,911,393	+		Pf6N2E2_3380	0.61	+0.0
3,911,394	-		Pf6N2E2_3380	0.61	+1.0
3,911,394	-		Pf6N2E2_3380	0.61	-0.5
3,911,394	-		Pf6N2E2_3380	0.61	+0.0
3,911,394	-		Pf6N2E2_3380	0.61	+1.0
3,911,556	+		Pf6N2E2_3380	0.70	+1.0
3,911,569	+		Pf6N2E2_3380	0.71	-0.6
3,911,570	-		Pf6N2E2_3380	0.71	+1.0
3,911,585	-		Pf6N2E2_3380	0.72	+0.0
3,911,669	+		Pf6N2E2_3380	0.77	+1.0
3,911,669	+		Pf6N2E2_3380	0.77	-1.8
3,911,779	+		Pf6N2E2_3380	0.84	-1.0
3,911,866	+		Pf6N2E2_3380	0.89	-0.9
3,911,985	+				-0.4
3,911,985	+				-0.6
3,911,986	-				-1.0
3,912,029	+				-1.0
3,912,056	+				+0.0
3,912,056	+				+0.0
3,912,056	+				-0.6
3,912,056	+				+1.0
3,912,056	+				+1.0
3,912,057	-				-1.5
3,912,057	-				-0.1
3,912,057	-				-1.2
3,912,057	-				-0.6
3,912,063	+				+1.0
3,912,064	-				-0.6
3,912,112	+				-0.6
3,912,112	+				-1.6
3,912,113	-				+0.0
3,912,113	-				-0.6
3,912,155	+				-0.9
3,912,155	+				-0.8
3,912,155	+				+0.0
3,912,155	+				-1.1
3,912,155	+				+0.6
3,912,155	+				+0.0
3,912,156	-				+0.0
3,912,156	-				-1.8
3,912,156	-				+0.0
3,912,157	+				-1.6
3,912,157	+				+0.0
3,912,158	-				-1.9
3,912,158	-				+0.0
3,912,158	-				+1.0
3,912,158	-				+1.0
3,912,225	-				-0.3
3,912,225	-				+1.0
3,912,226	+				+0.0
3,912,282	-				-1.2
3,912,309	-		Pf6N2E2_3381	0.12	+0.0
3,912,341	+		Pf6N2E2_3381	0.16	+0.0
3,912,342	-		Pf6N2E2_3381	0.16	+0.0
3,912,437	+		Pf6N2E2_3381	0.28	+1.0
3,912,437	+		Pf6N2E2_3381	0.28	+0.0
3,912,438	-		Pf6N2E2_3381	0.28	-1.0
3,912,438	-		Pf6N2E2_3381	0.28	-1.6
3,912,450	-		Pf6N2E2_3381	0.29	-0.8
3,912,557	+		Pf6N2E2_3381	0.42	-1.6
3,912,557	+		Pf6N2E2_3381	0.42	-1.0
3,912,623	+		Pf6N2E2_3381	0.50	-0.6
3,912,623	+		Pf6N2E2_3381	0.50	+0.4
3,912,623	+		Pf6N2E2_3381	0.50	+0.0
3,912,623	+		Pf6N2E2_3381	0.50	+0.0
3,912,624	-		Pf6N2E2_3381	0.50	+0.0
3,912,624	-		Pf6N2E2_3381	0.50	-1.3
3,912,624	-		Pf6N2E2_3381	0.50	-1.0
3,912,624	-		Pf6N2E2_3381	0.50	-0.7
3,912,624	-		Pf6N2E2_3381	0.50	-0.6
3,912,624	-		Pf6N2E2_3381	0.50	-1.0
3,912,624	-		Pf6N2E2_3381	0.50	+1.0