Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3342

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
3,867,503	+				-0.7
3,867,503	+				+1.0
3,867,504	-				+1.0
3,867,548	-				-0.9
3,867,548	-				-1.3
3,867,782	-		Pf6N2E2_3341	0.26	+0.0
3,867,782	-		Pf6N2E2_3341	0.26	+1.0
3,867,782	-		Pf6N2E2_3341	0.26	+0.0
3,867,816	-		Pf6N2E2_3341	0.30	+1.0
3,867,886	+		Pf6N2E2_3341	0.39	+1.0
3,867,886	+		Pf6N2E2_3341	0.39	-1.3
3,867,886	+		Pf6N2E2_3341	0.39	-1.0
3,867,887	-		Pf6N2E2_3341	0.39	+0.0
3,867,887	-		Pf6N2E2_3341	0.39	+0.0
3,867,887	-		Pf6N2E2_3341	0.39	+1.0
3,867,887	-		Pf6N2E2_3341	0.39	+1.0
3,867,887	-		Pf6N2E2_3341	0.39	+1.0
3,867,889	+		Pf6N2E2_3341	0.39	-0.2
3,867,890	-		Pf6N2E2_3341	0.40	+1.0
3,867,890	-		Pf6N2E2_3341	0.40	+0.0
3,867,890	-		Pf6N2E2_3341	0.40	+1.0
3,867,890	-		Pf6N2E2_3341	0.40	+0.3
3,867,890	-		Pf6N2E2_3341	0.40	+1.0
3,867,890	-		Pf6N2E2_3341	0.40	-0.6
3,867,890	-		Pf6N2E2_3341	0.40	-1.8
3,867,941	+		Pf6N2E2_3341	0.46	-0.6
3,867,941	+		Pf6N2E2_3341	0.46	-0.8
3,867,941	+		Pf6N2E2_3341	0.46	+0.0
3,867,941	+		Pf6N2E2_3341	0.46	-0.5
3,867,941	+		Pf6N2E2_3341	0.46	-1.0
3,867,941	+		Pf6N2E2_3341	0.46	-0.6
3,867,942	-		Pf6N2E2_3341	0.46	+1.0
3,867,942	-		Pf6N2E2_3341	0.46	+1.0
3,867,942	-		Pf6N2E2_3341	0.46	-1.2
3,867,942	-		Pf6N2E2_3341	0.46	+0.0
3,868,087	+		Pf6N2E2_3341	0.65	-1.3
3,868,087	+		Pf6N2E2_3341	0.65	-0.8
3,868,087	+		Pf6N2E2_3341	0.65	-0.7
3,868,088	-		Pf6N2E2_3341	0.65	-0.6
3,868,357	+				+1.0
3,868,357	+				+1.0
3,868,357	+				-2.1
3,868,485	+				+0.0
3,868,485	+				-0.1
3,868,485	+				-0.6
3,868,485	+				-0.8
3,868,486	-				+1.0
3,868,486	-				+1.0
3,868,486	-				+1.0
3,868,656	+				+1.0
3,868,713	-		Pf6N2E2_3342	0.11	-1.3
3,869,312	+		Pf6N2E2_3342	0.40	+1.0
3,869,313	-		Pf6N2E2_3342	0.40	-1.0
3,869,313	-		Pf6N2E2_3342	0.40	+1.0
3,869,355	-		Pf6N2E2_3342	0.43	-0.6
3,869,485	+		Pf6N2E2_3342	0.49	+1.0
3,869,485	+		Pf6N2E2_3342	0.49	+1.0
3,869,485	+		Pf6N2E2_3342	0.49	-0.3
3,869,486	-		Pf6N2E2_3342	0.49	-0.8
3,869,486	-		Pf6N2E2_3342	0.49	+1.0
3,869,486	-		Pf6N2E2_3342	0.49	+1.0
3,869,486	-		Pf6N2E2_3342	0.49	-1.8
3,869,498	-		Pf6N2E2_3342	0.50	+1.0
3,869,627	-		Pf6N2E2_3342	0.56	-1.3
3,869,659	+		Pf6N2E2_3342	0.58	+1.0
3,869,659	+		Pf6N2E2_3342	0.58	+1.0
3,869,659	+		Pf6N2E2_3342	0.58	+0.0
3,869,660	-		Pf6N2E2_3342	0.58	+0.0
3,869,821	+		Pf6N2E2_3342	0.65	+1.0
3,869,821	+		Pf6N2E2_3342	0.65	-1.3
3,869,821	+		Pf6N2E2_3342	0.65	-1.7
3,869,821	+		Pf6N2E2_3342	0.65	-1.0
3,869,822	-		Pf6N2E2_3342	0.66	-0.6
3,870,300	-		Pf6N2E2_3342	0.89	-1.0
3,870,552	+				+0.0
3,870,552	+				-0.6
3,870,555	-				-1.1
3,870,605	+				+0.0
3,870,605	+				-0.6
3,870,605	+				+0.0
3,870,605	+				-2.3
3,870,605	+				+0.3
3,870,605	+				-0.6
3,870,605	+				+0.0
3,870,605	+				-1.1
3,870,605	+				+0.0
3,870,605	+				-0.2
3,870,605	+				-0.6
3,870,606	-				+1.0
3,870,606	-				-0.7
3,870,606	-				+0.0
3,870,606	-				+1.0
3,870,606	-				-0.7
3,870,606	-				-0.9
3,870,606	-				-1.6
3,870,606	-				-1.8
3,870,606	-				-0.7
3,870,606	-				-0.6
3,870,606	-				-0.7
3,870,606	-				+0.0
3,870,606	-				+1.0
3,870,607	+				-0.6
3,870,608	-				+1.0
3,870,612	+				+0.0
3,870,612	+				-0.6
3,870,612	+				-2.8
3,870,613	-				-0.6
3,870,613	-				+1.0
3,870,632	+				+1.8
3,870,633	-				+1.0
3,870,633	-				+0.0
3,870,637	+				-0.4
3,870,637	+				-0.9
3,870,690	+				+0.0
3,870,690	+				-1.0
3,870,690	+				-0.9
3,870,690	+				+0.0
3,870,690	+				-0.8
3,870,691	-				+0.0
3,870,691	-				+1.0
3,870,691	-				-0.6
3,870,691	-				+0.0
3,870,875	+				-1.7
3,870,991	-		Pf6N2E2_3343	0.18	-0.2
3,871,008	+		Pf6N2E2_3343	0.20	-1.6
3,871,009	-		Pf6N2E2_3343	0.20	-0.9
3,871,009	-		Pf6N2E2_3343	0.20	-0.6
3,871,250	+		Pf6N2E2_3343	0.49	-0.8
3,871,251	-		Pf6N2E2_3343	0.49	-0.7
3,871,421	+		Pf6N2E2_3343	0.69	-0.6
3,871,421	+		Pf6N2E2_3343	0.69	+1.0
3,871,464	-		Pf6N2E2_3343	0.74	+1.0
3,871,464	-		Pf6N2E2_3343	0.74	+1.0