Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_327 and Pf6N2E2_328 are separated by 246 nucleotides Pf6N2E2_328 and Pf6N2E2_329 are separated by 161 nucleotides Pf6N2E2_329 and Pf6N2E2_330 are separated by 241 nucleotides
Pf6N2E2_327 - Alginate lyase precursor (EC 4.2.2.3), at 395,293 to 395,949
_327
Pf6N2E2_328 - hypothetical protein, at 396,196 to 396,531
_328
Pf6N2E2_329 - L-lactate permease, at 396,693 to 398,456
_329
Pf6N2E2_330 - Mesenchymal stem cell protein DSCD75, at 398,698 to 399,249
_330
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -2
-1
0
1 at 395.855 kb on + strand, within Pf6N2E2_327 at 395.855 kb on + strand, within Pf6N2E2_327 at 395.856 kb on - strand, within Pf6N2E2_327 at 395.856 kb on - strand, within Pf6N2E2_327 at 395.952 kb on + strand at 395.952 kb on + strand at 395.952 kb on + strand at 395.952 kb on + strand at 396.112 kb on + strand at 396.146 kb on + strand at 396.146 kb on + strand at 396.146 kb on + strand at 396.283 kb on + strand, within Pf6N2E2_328 at 396.283 kb on + strand, within Pf6N2E2_328 at 396.283 kb on + strand, within Pf6N2E2_328 at 396.284 kb on - strand, within Pf6N2E2_328 at 396.298 kb on + strand, within Pf6N2E2_328 at 396.298 kb on + strand, within Pf6N2E2_328 at 396.482 kb on - strand, within Pf6N2E2_328 at 396.547 kb on + strand at 396.547 kb on + strand at 396.547 kb on + strand at 396.548 kb on - strand at 396.548 kb on - strand at 396.548 kb on - strand at 396.548 kb on - strand at 396.548 kb on - strand at 396.565 kb on - strand at 396.574 kb on + strand at 396.574 kb on + strand at 396.713 kb on + strand at 396.714 kb on - strand at 396.714 kb on - strand at 396.714 kb on - strand at 396.714 kb on - strand at 396.714 kb on - strand at 396.714 kb on - strand at 396.714 kb on - strand at 396.733 kb on + strand at 396.733 kb on + strand at 396.734 kb on - strand at 396.734 kb on - strand at 396.734 kb on - strand at 396.734 kb on - strand at 396.734 kb on - strand at 396.734 kb on - strand at 397.126 kb on - strand, within Pf6N2E2_329 at 397.126 kb on - strand, within Pf6N2E2_329 at 397.126 kb on - strand, within Pf6N2E2_329 at 397.134 kb on - strand, within Pf6N2E2_329 at 397.134 kb on - strand, within Pf6N2E2_329 at 397.171 kb on + strand, within Pf6N2E2_329 at 397.172 kb on - strand, within Pf6N2E2_329 at 397.199 kb on - strand, within Pf6N2E2_329 at 397.199 kb on - strand, within Pf6N2E2_329 at 397.274 kb on - strand, within Pf6N2E2_329 at 397.292 kb on + strand, within Pf6N2E2_329 at 397.729 kb on + strand, within Pf6N2E2_329 at 397.729 kb on + strand, within Pf6N2E2_329 at 397.730 kb on - strand, within Pf6N2E2_329 at 398.248 kb on + strand, within Pf6N2E2_329 at 398.249 kb on - strand, within Pf6N2E2_329 at 398.437 kb on + strand at 398.438 kb on - strand at 398.474 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.516 kb on + strand at 398.517 kb on - strand at 398.517 kb on - strand at 398.517 kb on - strand at 398.518 kb on + strand at 398.519 kb on - strand at 398.623 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.683 kb on + strand at 398.684 kb on - strand at 398.684 kb on - strand at 399.074 kb on + strand, within Pf6N2E2_330 at 399.074 kb on + strand, within Pf6N2E2_330 at 399.075 kb on - strand, within Pf6N2E2_330 at 399.107 kb on + strand, within Pf6N2E2_330 at 399.108 kb on - strand, within Pf6N2E2_330 at 399.108 kb on - strand, within Pf6N2E2_330 at 399.283 kb on + strand at 399.284 kb on - strand at 399.307 kb on - strand at 399.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 395,855 + Pf6N2E2_327 0.86 -2.4 395,855 + Pf6N2E2_327 0.86 +0.9 395,856 - Pf6N2E2_327 0.86 +0.9 395,856 - Pf6N2E2_327 0.86 +0.9 395,952 + +0.6 395,952 + -0.2 395,952 + +0.9 395,952 + -0.1 396,112 + -1.1 396,146 + -0.6 396,146 + +0.9 396,146 + -0.1 396,283 + Pf6N2E2_328 0.26 -0.7 396,283 + Pf6N2E2_328 0.26 -0.1 396,283 + Pf6N2E2_328 0.26 -0.1 396,284 - Pf6N2E2_328 0.26 +0.9 396,298 + Pf6N2E2_328 0.30 +0.9 396,298 + Pf6N2E2_328 0.30 -0.1 396,482 - Pf6N2E2_328 0.85 -0.8 396,547 + +0.9 396,547 + +0.9 396,547 + +0.9 396,548 - -0.9 396,548 - +0.9 396,548 - -0.1 396,548 - -0.1 396,548 - -0.7 396,565 - -0.8 396,574 + -0.5 396,574 + +0.9 396,713 + -0.9 396,714 - +0.9 396,714 - +0.9 396,714 - -1.6 396,714 - -0.4 396,714 - -0.1 396,714 - +0.3 396,714 - -0.1 396,733 + +0.9 396,733 + +0.9 396,734 - -0.1 396,734 - -0.9 396,734 - +0.9 396,734 - -1.0 396,734 - -1.3 396,734 - -0.7 397,126 - Pf6N2E2_329 0.25 -0.7 397,126 - Pf6N2E2_329 0.25 -0.7 397,126 - Pf6N2E2_329 0.25 -0.8 397,134 - Pf6N2E2_329 0.25 +0.9 397,134 - Pf6N2E2_329 0.25 +0.9 397,171 + Pf6N2E2_329 0.27 -0.7 397,172 - Pf6N2E2_329 0.27 -0.1 397,199 - Pf6N2E2_329 0.29 -0.7 397,199 - Pf6N2E2_329 0.29 -1.2 397,274 - Pf6N2E2_329 0.33 +0.9 397,292 + Pf6N2E2_329 0.34 +0.9 397,729 + Pf6N2E2_329 0.59 +0.9 397,729 + Pf6N2E2_329 0.59 +0.9 397,730 - Pf6N2E2_329 0.59 +0.9 398,248 + Pf6N2E2_329 0.88 -1.2 398,249 - Pf6N2E2_329 0.88 +0.9 398,437 + +0.9 398,438 - +0.9 398,474 + -0.1 398,516 + +0.9 398,516 + +0.9 398,516 + -0.1 398,516 + -0.1 398,516 + -0.7 398,517 - +0.9 398,517 - -0.1 398,517 - -0.1 398,518 + -0.1 398,519 - -1.7 398,623 + -0.8 398,683 + +0.9 398,683 + +0.9 398,683 + -0.7 398,683 + -0.8 398,684 - -0.1 398,684 - -0.6 399,074 + Pf6N2E2_330 0.68 -1.1 399,074 + Pf6N2E2_330 0.68 +0.9 399,075 - Pf6N2E2_330 0.68 -1.7 399,107 + Pf6N2E2_330 0.74 -1.1 399,108 - Pf6N2E2_330 0.74 -1.0 399,108 - Pf6N2E2_330 0.74 +0.1 399,283 + -0.8 399,284 - -0.1 399,307 - -0.1 399,392 + -0.1
Or see this region's nucleotide sequence