Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2666

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
3,138,237	-				-0.1
3,138,237	-				-2.4
3,138,393	+				+0.9
3,138,394	-				-0.1
3,138,394	-				+0.9
3,138,394	-				-1.0
3,138,394	-				-0.8
3,138,394	-				-0.1
3,138,434	-				-0.1
3,138,439	+				-0.1
3,138,440	-				-1.1
3,138,629	+		Pf6N2E2_2665	0.28	+0.8
3,138,629	+		Pf6N2E2_2665	0.28	-0.1
3,138,630	-		Pf6N2E2_2665	0.28	+0.9
3,138,692	+		Pf6N2E2_2665	0.37	+0.9
3,138,692	+		Pf6N2E2_2665	0.37	-1.1
3,138,692	+		Pf6N2E2_2665	0.37	+0.9
3,138,692	+		Pf6N2E2_2665	0.37	-0.7
3,138,693	-		Pf6N2E2_2665	0.37	+0.9
3,138,693	-		Pf6N2E2_2665	0.37	-0.1
3,138,693	-		Pf6N2E2_2665	0.37	-2.2
3,138,693	-		Pf6N2E2_2665	0.37	-0.7
3,138,703	+		Pf6N2E2_2665	0.38	+0.9
3,138,704	-		Pf6N2E2_2665	0.38	-0.6
3,138,732	-		Pf6N2E2_2665	0.42	-0.1
3,138,752	+		Pf6N2E2_2665	0.45	-0.7
3,138,752	+		Pf6N2E2_2665	0.45	+0.9
3,138,753	-		Pf6N2E2_2665	0.45	-1.2
3,138,759	-		Pf6N2E2_2665	0.46	+0.9
3,138,759	-		Pf6N2E2_2665	0.46	-0.7
3,138,795	-		Pf6N2E2_2665	0.51	-0.1
3,138,795	-		Pf6N2E2_2665	0.51	-0.6
3,138,795	-		Pf6N2E2_2665	0.51	-0.7
3,138,924	-		Pf6N2E2_2665	0.69	+0.9
3,138,924	-		Pf6N2E2_2665	0.69	-0.1
3,138,968	+		Pf6N2E2_2665	0.75	-2.2
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,969	-		Pf6N2E2_2665	0.75	-0.1
3,138,969	-		Pf6N2E2_2665	0.75	-1.3
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,971	-		Pf6N2E2_2665	0.76	-0.7
3,138,971	-		Pf6N2E2_2665	0.76	-0.1
3,139,040	+		Pf6N2E2_2665	0.85	+0.9
3,139,041	-		Pf6N2E2_2665	0.85	+0.9
3,139,041	-		Pf6N2E2_2665	0.85	+0.9
3,139,041	-		Pf6N2E2_2665	0.85	-1.4
3,139,143	-				-0.1
3,139,143	-				-0.6
3,139,157	+				-0.4
3,139,158	-				+0.9
3,139,203	+				+0.9
3,139,203	+				-0.1
3,139,203	+				-0.5
3,139,204	-				-0.1
3,139,204	-				-1.4
3,139,204	-				-0.8
3,139,266	+				+0.1
3,139,439	+		Pf6N2E2_2666	0.25	-0.1
3,139,440	-		Pf6N2E2_2666	0.25	+0.9
3,139,440	-		Pf6N2E2_2666	0.25	-0.1
3,139,440	-		Pf6N2E2_2666	0.25	-1.2
3,139,440	-		Pf6N2E2_2666	0.25	-0.1
3,139,488	+		Pf6N2E2_2666	0.30	-1.0
3,139,513	+		Pf6N2E2_2666	0.33	+0.9
3,139,659	-		Pf6N2E2_2666	0.50	-1.5
3,140,090	+				-0.1
3,140,090	+				-0.1
3,140,090	+				-0.7
3,140,091	-				-0.7
3,140,350	-		Pf6N2E2_2667	0.50	+0.9
3,140,351	+		Pf6N2E2_2667	0.50	-0.1
3,140,352	-		Pf6N2E2_2667	0.50	-0.1
3,140,352	-		Pf6N2E2_2667	0.50	+0.9
3,140,352	-		Pf6N2E2_2667	0.50	-0.1
3,140,352	-		Pf6N2E2_2667	0.50	+0.9
3,140,378	+		Pf6N2E2_2667	0.57	-0.1
3,140,378	+		Pf6N2E2_2667	0.57	+0.9
3,140,451	-		Pf6N2E2_2667	0.75	-0.8
3,140,451	-		Pf6N2E2_2667	0.75	-0.1
3,140,451	-		Pf6N2E2_2667	0.75	-0.1
3,140,462	+		Pf6N2E2_2667	0.78	-1.3
3,140,462	+		Pf6N2E2_2667	0.78	+0.9
3,140,476	-		Pf6N2E2_2667	0.82	-0.7
3,140,481	+		Pf6N2E2_2667	0.83	+2.9
3,140,481	+		Pf6N2E2_2667	0.83	+0.9
3,140,482	-		Pf6N2E2_2667	0.83	+0.9
3,140,535	+				-0.5
3,140,536	-				-0.8
3,140,536	-				-0.1
3,140,536	-				+0.9
3,140,537	+				-0.1
3,140,537	+				-0.1
3,140,537	+				-0.1
3,140,537	+				-0.7
3,140,537	+				+0.9
3,140,537	+				-0.8
3,140,537	+				-0.5
3,140,538	-				+0.9
3,140,538	-				-0.1
3,140,538	-				-0.3
3,140,538	-				-0.1
3,140,538	-				+0.9
3,140,538	-				+0.9
3,140,578	+				-1.0
3,140,578	+				+0.9
3,140,579	-				+1.9
3,140,579	-				+0.1
3,140,582	+				+0.9
3,140,582	+				-1.0
3,140,582	+				-1.0
3,140,582	+				+0.9
3,140,583	-				-0.1
3,140,583	-				-0.4
3,140,583	-				-0.1
3,140,583	-				+0.9
3,140,583	-				-0.4
3,140,641	+				-0.1
3,140,641	+				+0.9
3,140,641	+				+0.9
3,140,642	-				+0.9
3,140,642	-				+0.9
3,140,642	-				-0.1
3,140,642	-				+0.9
3,140,679	+				+0.9
3,140,680	-				+0.9
3,140,726	-				-0.7
3,140,726	-				+0.9
3,140,734	-				+0.9
3,140,740	+				+0.9
3,140,744	+				-0.6
3,140,744	+				-0.1
3,140,745	-				+0.9
3,140,745	-				+0.9
3,140,745	-				+0.9
3,140,799	+				-0.1
3,140,800	-				-1.2
3,141,068	+		Pf6N2E2_2668	0.30	-0.3
3,141,069	-		Pf6N2E2_2668	0.30	+0.9
3,141,069	-		Pf6N2E2_2668	0.30	-0.1