Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_784 and Pf6N2E2_785 are separated by 37 nucleotides Pf6N2E2_785 and Pf6N2E2_786 are separated by 109 nucleotides Pf6N2E2_786 and Pf6N2E2_787 are separated by 253 nucleotides
Pf6N2E2_784 - Outer membrane usher protein FIMD, at 897,590 to 900,085
_784
Pf6N2E2_785 - P pilus assembly protein, chaperone PapD, at 900,123 to 900,884
_785
Pf6N2E2_786 - Type-1 fimbrial protein, A chain precursor, at 900,994 to 901,542
_786
Pf6N2E2_787 - YD repeat protein, at 901,796 to 906,883
_787
Position (kb) 900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 899.136 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.154 kb on + strand, within Pf6N2E2_784 at 899.155 kb on - strand, within Pf6N2E2_784 at 899.155 kb on - strand, within Pf6N2E2_784 at 899.155 kb on - strand, within Pf6N2E2_784 at 899.155 kb on - strand, within Pf6N2E2_784 at 899.164 kb on - strand at 899.379 kb on + strand, within Pf6N2E2_784 at 899.379 kb on + strand, within Pf6N2E2_784 at 899.379 kb on + strand, within Pf6N2E2_784 at 899.379 kb on + strand, within Pf6N2E2_784 at 899.379 kb on + strand, within Pf6N2E2_784 at 899.379 kb on + strand, within Pf6N2E2_784 at 899.379 kb on + strand, within Pf6N2E2_784 at 899.380 kb on - strand, within Pf6N2E2_784 at 899.383 kb on + strand, within Pf6N2E2_784 at 899.383 kb on + strand, within Pf6N2E2_784 at 899.383 kb on + strand, within Pf6N2E2_784 at 899.383 kb on + strand, within Pf6N2E2_784 at 899.383 kb on + strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.384 kb on - strand, within Pf6N2E2_784 at 899.385 kb on + strand, within Pf6N2E2_784 at 899.385 kb on + strand, within Pf6N2E2_784 at 899.481 kb on + strand, within Pf6N2E2_784 at 899.544 kb on + strand, within Pf6N2E2_784 at 899.544 kb on + strand, within Pf6N2E2_784 at 899.544 kb on + strand, within Pf6N2E2_784 at 899.544 kb on - strand, within Pf6N2E2_784 at 899.671 kb on + strand, within Pf6N2E2_784 at 899.688 kb on - strand, within Pf6N2E2_784 at 899.750 kb on + strand, within Pf6N2E2_784 at 899.750 kb on + strand, within Pf6N2E2_784 at 899.750 kb on + strand, within Pf6N2E2_784 at 899.751 kb on - strand, within Pf6N2E2_784 at 899.751 kb on - strand, within Pf6N2E2_784 at 899.751 kb on - strand, within Pf6N2E2_784 at 900.098 kb on + strand at 900.278 kb on + strand, within Pf6N2E2_785 at 900.279 kb on - strand, within Pf6N2E2_785 at 900.352 kb on + strand, within Pf6N2E2_785 at 900.352 kb on + strand, within Pf6N2E2_785 at 900.352 kb on + strand, within Pf6N2E2_785 at 900.479 kb on + strand, within Pf6N2E2_785 at 900.535 kb on + strand, within Pf6N2E2_785 at 900.535 kb on + strand, within Pf6N2E2_785 at 900.699 kb on + strand, within Pf6N2E2_785 at 900.699 kb on + strand, within Pf6N2E2_785 at 900.699 kb on + strand, within Pf6N2E2_785 at 900.699 kb on + strand, within Pf6N2E2_785 at 900.699 kb on + strand, within Pf6N2E2_785 at 900.700 kb on - strand, within Pf6N2E2_785 at 900.700 kb on - strand, within Pf6N2E2_785 at 900.701 kb on + strand, within Pf6N2E2_785 at 900.892 kb on + strand at 900.958 kb on + strand at 901.116 kb on - strand, within Pf6N2E2_786 at 901.255 kb on - strand, within Pf6N2E2_786 at 901.377 kb on - strand, within Pf6N2E2_786 at 901.377 kb on - strand, within Pf6N2E2_786 at 901.377 kb on - strand, within Pf6N2E2_786 at 901.377 kb on - strand, within Pf6N2E2_786 at 901.377 kb on - strand, within Pf6N2E2_786 at 901.638 kb on + strand at 901.644 kb on + strand at 901.644 kb on + strand at 901.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 899,136 + Pf6N2E2_784 0.62 -1.0 899,154 + Pf6N2E2_784 0.63 +0.9 899,154 + Pf6N2E2_784 0.63 -0.1 899,154 + Pf6N2E2_784 0.63 -0.7 899,154 + Pf6N2E2_784 0.63 -1.0 899,154 + Pf6N2E2_784 0.63 -0.1 899,154 + Pf6N2E2_784 0.63 -0.5 899,154 + Pf6N2E2_784 0.63 +0.9 899,155 - Pf6N2E2_784 0.63 +0.9 899,155 - Pf6N2E2_784 0.63 -0.8 899,155 - Pf6N2E2_784 0.63 -0.1 899,155 - Pf6N2E2_784 0.63 +0.9 899,164 - +0.9 899,379 + Pf6N2E2_784 0.72 +0.9 899,379 + Pf6N2E2_784 0.72 -1.1 899,379 + Pf6N2E2_784 0.72 +0.9 899,379 + Pf6N2E2_784 0.72 -1.1 899,379 + Pf6N2E2_784 0.72 -0.7 899,379 + Pf6N2E2_784 0.72 +0.9 899,379 + Pf6N2E2_784 0.72 +0.9 899,380 - Pf6N2E2_784 0.72 +0.9 899,383 + Pf6N2E2_784 0.72 -0.7 899,383 + Pf6N2E2_784 0.72 -0.1 899,383 + Pf6N2E2_784 0.72 +0.9 899,383 + Pf6N2E2_784 0.72 +0.9 899,383 + Pf6N2E2_784 0.72 +0.9 899,384 - Pf6N2E2_784 0.72 -0.1 899,384 - Pf6N2E2_784 0.72 -0.1 899,384 - Pf6N2E2_784 0.72 -0.1 899,384 - Pf6N2E2_784 0.72 -0.1 899,384 - Pf6N2E2_784 0.72 -0.1 899,384 - Pf6N2E2_784 0.72 -0.1 899,384 - Pf6N2E2_784 0.72 +0.9 899,384 - Pf6N2E2_784 0.72 +0.9 899,385 + Pf6N2E2_784 0.72 +0.9 899,385 + Pf6N2E2_784 0.72 -1.1 899,481 + Pf6N2E2_784 0.76 -0.1 899,544 + Pf6N2E2_784 0.78 -0.1 899,544 + Pf6N2E2_784 0.78 -2.6 899,544 + Pf6N2E2_784 0.78 +0.9 899,544 - Pf6N2E2_784 0.78 +0.9 899,671 + Pf6N2E2_784 0.83 +0.9 899,688 - Pf6N2E2_784 0.84 +0.9 899,750 + Pf6N2E2_784 0.87 -0.1 899,750 + Pf6N2E2_784 0.87 -0.1 899,750 + Pf6N2E2_784 0.87 +0.9 899,751 - Pf6N2E2_784 0.87 -1.1 899,751 - Pf6N2E2_784 0.87 -1.3 899,751 - Pf6N2E2_784 0.87 -0.1 900,098 + +0.9 900,278 + Pf6N2E2_785 0.20 +0.9 900,279 - Pf6N2E2_785 0.20 -0.8 900,352 + Pf6N2E2_785 0.30 -0.1 900,352 + Pf6N2E2_785 0.30 -0.4 900,352 + Pf6N2E2_785 0.30 +0.9 900,479 + Pf6N2E2_785 0.47 +0.9 900,535 + Pf6N2E2_785 0.54 +0.9 900,535 + Pf6N2E2_785 0.54 -0.1 900,699 + Pf6N2E2_785 0.76 -0.1 900,699 + Pf6N2E2_785 0.76 +0.9 900,699 + Pf6N2E2_785 0.76 +0.9 900,699 + Pf6N2E2_785 0.76 +0.9 900,699 + Pf6N2E2_785 0.76 +0.9 900,700 - Pf6N2E2_785 0.76 +0.9 900,700 - Pf6N2E2_785 0.76 +0.9 900,701 + Pf6N2E2_785 0.76 +0.7 900,892 + -0.1 900,958 + +1.9 901,116 - Pf6N2E2_786 0.22 +0.9 901,255 - Pf6N2E2_786 0.48 +0.0 901,377 - Pf6N2E2_786 0.70 +0.9 901,377 - Pf6N2E2_786 0.70 -1.1 901,377 - Pf6N2E2_786 0.70 +0.9 901,377 - Pf6N2E2_786 0.70 +0.9 901,377 - Pf6N2E2_786 0.70 +0.9 901,638 + -3.2 901,644 + +0.9 901,644 + +0.9 901,877 + +0.9
Or see this region's nucleotide sequence