Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5321

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
6,115,353	+				-0.2
6,115,353	+				+1.0
6,115,353	+				-0.7
6,115,354	-				-0.9
6,115,369	+				-0.3
6,115,369	+				-0.5
6,115,370	-				-2.0
6,115,370	-				-0.9
6,115,464	+		Pf6N2E2_5319	0.17	+1.0
6,115,465	-		Pf6N2E2_5319	0.17	+0.7
6,115,509	+		Pf6N2E2_5319	0.24	-0.1
6,115,524	-		Pf6N2E2_5319	0.26	+1.0
6,115,572	+		Pf6N2E2_5319	0.34	-0.7
6,115,573	-		Pf6N2E2_5319	0.34	+1.0
6,115,576	+		Pf6N2E2_5319	0.35	+0.0
6,115,576	+		Pf6N2E2_5319	0.35	+1.0
6,115,576	+		Pf6N2E2_5319	0.35	-0.8
6,115,577	-		Pf6N2E2_5319	0.35	-0.6
6,115,577	-		Pf6N2E2_5319	0.35	+1.0
6,115,617	+		Pf6N2E2_5319	0.41	-1.3
6,115,617	+		Pf6N2E2_5319	0.41	+1.0
6,115,618	-		Pf6N2E2_5319	0.41	+0.5
6,115,854	+		Pf6N2E2_5319	0.79	+2.0
6,115,854	+		Pf6N2E2_5319	0.79	-0.7
6,115,854	+		Pf6N2E2_5319	0.79	-1.6
6,115,854	+		Pf6N2E2_5319	0.79	+1.0
6,115,854	+		Pf6N2E2_5319	0.79	+1.0
6,115,854	+		Pf6N2E2_5319	0.79	+0.0
6,115,854	+		Pf6N2E2_5319	0.79	-1.3
6,115,854	+		Pf6N2E2_5319	0.79	-0.6
6,115,855	-		Pf6N2E2_5319	0.79	+1.0
6,115,855	-		Pf6N2E2_5319	0.79	+0.6
6,115,855	-		Pf6N2E2_5319	0.79	+1.0
6,115,855	-		Pf6N2E2_5319	0.79	-0.6
6,115,855	-		Pf6N2E2_5319	0.79	+0.0
6,115,965	+				+1.0
6,115,965	+				-0.6
6,115,965	+				-1.6
6,115,966	-				-0.1
6,115,966	-				+1.0
6,115,983	+				-0.6
6,115,983	+				-0.3
6,115,983	+				+1.0
6,115,983	+				-0.1
6,115,984	-				+0.0
6,115,984	-				-1.8
6,115,984	-				-0.6
6,116,044	-		Pf6N2E2_5320	0.17	+1.0
6,116,103	+		Pf6N2E2_5320	0.35	+1.0
6,116,103	+		Pf6N2E2_5320	0.35	+0.0
6,116,104	-		Pf6N2E2_5320	0.35	+1.0
6,116,104	-		Pf6N2E2_5320	0.35	-0.6
6,116,164	+		Pf6N2E2_5320	0.53	-0.6
6,116,164	+		Pf6N2E2_5320	0.53	+0.0
6,116,164	+		Pf6N2E2_5320	0.53	+0.2
6,116,165	-		Pf6N2E2_5320	0.53	-0.4
6,116,181	+		Pf6N2E2_5320	0.58	+1.0
6,116,181	+		Pf6N2E2_5320	0.58	-1.0
6,116,181	+		Pf6N2E2_5320	0.58	+0.0
6,116,182	-		Pf6N2E2_5320	0.58	+1.0
6,116,182	-		Pf6N2E2_5320	0.58	-0.3
6,116,216	+		Pf6N2E2_5320	0.68	-0.6
6,116,216	+		Pf6N2E2_5320	0.68	+1.0
6,116,216	+		Pf6N2E2_5320	0.68	+0.0
6,116,216	+		Pf6N2E2_5320	0.68	+1.0
6,116,216	+		Pf6N2E2_5320	0.68	+0.3
6,116,216	+		Pf6N2E2_5320	0.68	+0.0
6,116,216	+		Pf6N2E2_5320	0.68	+1.0
6,116,217	-		Pf6N2E2_5320	0.69	-0.2
6,116,217	-		Pf6N2E2_5320	0.69	+1.0
6,116,217	-		Pf6N2E2_5320	0.69	+1.0
6,116,217	-		Pf6N2E2_5320	0.69	-0.6
6,116,217	-		Pf6N2E2_5320	0.69	-0.4
6,116,217	-		Pf6N2E2_5320	0.69	+0.0
6,116,636	+		Pf6N2E2_5321	0.34	-0.1
6,116,691	-		Pf6N2E2_5321	0.40	-0.6
6,116,691	-		Pf6N2E2_5321	0.40	+0.8
6,116,691	-		Pf6N2E2_5321	0.40	+0.0
6,116,703	-		Pf6N2E2_5321	0.42	-0.6
6,116,703	-		Pf6N2E2_5321	0.42	-2.0
6,116,711	+		Pf6N2E2_5321	0.43	+1.0
6,116,784	-		Pf6N2E2_5321	0.51	+0.0
6,116,864	+		Pf6N2E2_5321	0.60	-0.7
6,116,865	-		Pf6N2E2_5321	0.60	+0.4
6,116,865	-		Pf6N2E2_5321	0.60	+1.0
6,116,865	-		Pf6N2E2_5321	0.60	-1.9
6,116,966	+		Pf6N2E2_5321	0.71	+1.0
6,116,966	+		Pf6N2E2_5321	0.71	-0.8
6,116,967	-		Pf6N2E2_5321	0.71	-0.6
6,116,967	-		Pf6N2E2_5321	0.71	-0.3
6,117,029	+		Pf6N2E2_5321	0.78	+1.0
6,117,029	+		Pf6N2E2_5321	0.78	+1.0
6,117,059	+		Pf6N2E2_5321	0.82	+0.0
6,117,059	+		Pf6N2E2_5321	0.82	+1.0
6,117,059	+		Pf6N2E2_5321	0.82	+1.0
6,117,059	+		Pf6N2E2_5321	0.82	+0.0
6,117,059	+		Pf6N2E2_5321	0.82	+1.0
6,117,059	+		Pf6N2E2_5321	0.82	+1.0
6,117,059	+		Pf6N2E2_5321	0.82	+0.7
6,117,060	-		Pf6N2E2_5321	0.82	+0.0
6,117,060	-		Pf6N2E2_5321	0.82	-0.7
6,117,060	-		Pf6N2E2_5321	0.82	+1.0
6,117,060	-		Pf6N2E2_5321	0.82	-0.5
6,117,060	-		Pf6N2E2_5321	0.82	+0.0
6,117,068	+		Pf6N2E2_5321	0.83	+0.0
6,117,068	+		Pf6N2E2_5321	0.83	-0.6
6,117,068	+		Pf6N2E2_5321	0.83	+0.0
6,117,068	+		Pf6N2E2_5321	0.83	+1.0
6,117,086	+		Pf6N2E2_5321	0.85	-0.3
6,117,209	+				-0.6
6,117,209	+				+1.0
6,117,209	+				+0.4
6,117,209	+				-0.6
6,117,210	-				-0.7
6,117,210	-				-0.4
6,117,218	+				+1.0
6,117,218	+				-0.2
6,117,218	+				+1.0
6,117,219	-				-1.0
6,117,219	-				+0.0
6,117,219	-				+1.0
6,117,219	-				-0.7
6,117,340	+				+1.0
6,117,355	+				+1.0
6,117,377	-				-1.6
6,117,377	-				+0.0
6,117,377	-				+0.3
6,117,377	-				-0.6
6,117,380	+				+1.0
6,117,380	+				+0.0
6,117,406	+				+1.0
6,117,406	+				-0.6
6,117,407	-				+1.0
6,117,431	+				+0.0
6,117,431	+				-1.0
6,117,431	+				-0.6
6,117,431	+				-0.7
6,117,431	+				+0.0
6,117,431	+				+0.0
6,117,432	-				+1.0
6,117,436	+				-0.6
6,117,436	+				+1.0
6,117,436	+				-0.4
6,117,437	-				+1.0
6,117,437	-				-1.4
6,117,511	+		Pf6N2E2_5322	0.23	-2.3
6,117,526	-		Pf6N2E2_5322	0.28	+1.0
6,117,574	-		Pf6N2E2_5322	0.43	+0.4
6,117,595	+		Pf6N2E2_5322	0.50	-0.3
6,117,595	+		Pf6N2E2_5322	0.50	-1.0
6,117,595	+		Pf6N2E2_5322	0.50	+0.0
6,117,595	+		Pf6N2E2_5322	0.50	-0.1
6,117,595	+		Pf6N2E2_5322	0.50	-0.6
6,117,595	+		Pf6N2E2_5322	0.50	+1.0
6,117,595	+		Pf6N2E2_5322	0.50	-0.7
6,117,595	+		Pf6N2E2_5322	0.50	+0.0
6,117,595	+		Pf6N2E2_5322	0.50	+1.0
6,117,595	+		Pf6N2E2_5322	0.50	-0.7
6,117,595	+		Pf6N2E2_5322	0.50	-0.5
6,117,595	+		Pf6N2E2_5322	0.50	-0.8
6,117,596	-		Pf6N2E2_5322	0.50	-1.0
6,117,596	-		Pf6N2E2_5322	0.50	+1.0
6,117,596	-		Pf6N2E2_5322	0.50	+0.0
6,117,596	-		Pf6N2E2_5322	0.50	+1.0
6,117,596	-		Pf6N2E2_5322	0.50	+1.0
6,117,914	+				-0.6
6,117,914	+				+0.0
6,117,915	-				-0.7
6,117,915	-				+1.0
6,117,915	-				-0.6
6,117,915	-				+0.0
6,117,939	+				-0.2
6,117,939	+				+1.3
6,117,939	+				+0.4
6,117,940	-				+0.0
6,117,940	-				-0.9
6,118,079	+		Pf6N2E2_5323	0.20	+0.0