Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4935 and Pf6N2E2_4936 are separated by 269 nucleotides Pf6N2E2_4936 and Pf6N2E2_4937 are separated by 30 nucleotides
Pf6N2E2_4935 - Fic family protein, at 5,687,198 to 5,688,334
_4935
Pf6N2E2_4936 - Probable signal peptide protein, at 5,688,604 to 5,689,392
_4936
Pf6N2E2_4937 - FIG00955149: hypothetical protein, at 5,689,423 to 5,691,132
_4937
Position (kb) 5688
5689
5690 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5687.617 kb on - strand, within Pf6N2E2_4935 at 5687.873 kb on + strand, within Pf6N2E2_4935 at 5687.873 kb on + strand, within Pf6N2E2_4935 at 5687.874 kb on - strand, within Pf6N2E2_4935 at 5688.011 kb on - strand, within Pf6N2E2_4935 at 5688.173 kb on - strand, within Pf6N2E2_4935 at 5688.366 kb on + strand at 5688.367 kb on - strand at 5688.367 kb on - strand at 5688.406 kb on + strand at 5688.407 kb on - strand at 5688.407 kb on - strand at 5688.407 kb on - strand at 5688.429 kb on + strand at 5688.429 kb on + strand at 5688.429 kb on + strand at 5688.429 kb on + strand at 5688.430 kb on - strand at 5688.430 kb on - strand at 5688.430 kb on - strand at 5688.472 kb on + strand at 5688.473 kb on - strand at 5688.504 kb on + strand at 5688.504 kb on + strand at 5688.504 kb on + strand at 5688.504 kb on + strand at 5688.505 kb on - strand at 5688.505 kb on - strand at 5688.505 kb on - strand at 5688.505 kb on - strand at 5688.505 kb on - strand at 5688.505 kb on - strand at 5688.505 kb on - strand at 5688.545 kb on - strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.601 kb on + strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.602 kb on - strand at 5688.621 kb on - strand at 5688.869 kb on - strand, within Pf6N2E2_4936 at 5688.901 kb on + strand, within Pf6N2E2_4936 at 5688.901 kb on + strand, within Pf6N2E2_4936 at 5688.901 kb on + strand, within Pf6N2E2_4936 at 5688.902 kb on - strand, within Pf6N2E2_4936 at 5688.976 kb on + strand, within Pf6N2E2_4936 at 5688.976 kb on + strand, within Pf6N2E2_4936 at 5688.976 kb on + strand, within Pf6N2E2_4936 at 5688.976 kb on + strand, within Pf6N2E2_4936 at 5688.977 kb on - strand, within Pf6N2E2_4936 at 5688.977 kb on - strand, within Pf6N2E2_4936 at 5688.977 kb on - strand, within Pf6N2E2_4936 at 5688.977 kb on - strand, within Pf6N2E2_4936 at 5688.977 kb on - strand, within Pf6N2E2_4936 at 5688.977 kb on - strand, within Pf6N2E2_4936 at 5689.060 kb on - strand, within Pf6N2E2_4936 at 5689.192 kb on + strand, within Pf6N2E2_4936 at 5689.192 kb on + strand, within Pf6N2E2_4936 at 5689.192 kb on + strand, within Pf6N2E2_4936 at 5689.192 kb on + strand, within Pf6N2E2_4936 at 5689.193 kb on - strand, within Pf6N2E2_4936 at 5689.193 kb on - strand, within Pf6N2E2_4936 at 5689.193 kb on - strand, within Pf6N2E2_4936 at 5689.193 kb on - strand, within Pf6N2E2_4936 at 5689.193 kb on - strand, within Pf6N2E2_4936 at 5689.193 kb on - strand, within Pf6N2E2_4936 at 5689.201 kb on + strand, within Pf6N2E2_4936 at 5689.201 kb on + strand, within Pf6N2E2_4936 at 5689.201 kb on + strand, within Pf6N2E2_4936 at 5689.201 kb on + strand, within Pf6N2E2_4936 at 5689.202 kb on - strand, within Pf6N2E2_4936 at 5689.202 kb on - strand, within Pf6N2E2_4936 at 5689.202 kb on - strand, within Pf6N2E2_4936 at 5689.211 kb on - strand, within Pf6N2E2_4936 at 5689.211 kb on - strand, within Pf6N2E2_4936 at 5689.211 kb on - strand, within Pf6N2E2_4936 at 5689.211 kb on - strand, within Pf6N2E2_4936 at 5689.211 kb on - strand, within Pf6N2E2_4936 at 5689.222 kb on + strand, within Pf6N2E2_4936 at 5689.222 kb on + strand, within Pf6N2E2_4936 at 5689.223 kb on - strand, within Pf6N2E2_4936 at 5689.223 kb on - strand, within Pf6N2E2_4936 at 5689.223 kb on - strand, within Pf6N2E2_4936 at 5689.237 kb on + strand, within Pf6N2E2_4936 at 5689.387 kb on + strand at 5689.387 kb on + strand at 5689.387 kb on + strand at 5689.388 kb on - strand at 5689.388 kb on - strand at 5689.388 kb on - strand at 5689.388 kb on - strand at 5689.388 kb on - strand at 5689.390 kb on + strand at 5689.422 kb on + strand at 5689.423 kb on - strand at 5689.706 kb on - strand, within Pf6N2E2_4937 at 5689.709 kb on - strand, within Pf6N2E2_4937 at 5689.709 kb on - strand, within Pf6N2E2_4937 at 5689.762 kb on + strand, within Pf6N2E2_4937 at 5689.762 kb on + strand, within Pf6N2E2_4937 at 5689.762 kb on + strand, within Pf6N2E2_4937 at 5689.762 kb on + strand, within Pf6N2E2_4937 at 5689.763 kb on - strand, within Pf6N2E2_4937 at 5689.763 kb on - strand, within Pf6N2E2_4937 at 5689.763 kb on - strand, within Pf6N2E2_4937 at 5689.763 kb on - strand, within Pf6N2E2_4937 at 5689.763 kb on - strand, within Pf6N2E2_4937 at 5689.763 kb on - strand, within Pf6N2E2_4937 at 5689.875 kb on - strand, within Pf6N2E2_4937 at 5689.991 kb on - strand, within Pf6N2E2_4937 at 5689.991 kb on - strand, within Pf6N2E2_4937 at 5690.003 kb on - strand, within Pf6N2E2_4937 at 5690.077 kb on + strand, within Pf6N2E2_4937 at 5690.077 kb on + strand, within Pf6N2E2_4937 at 5690.077 kb on + strand, within Pf6N2E2_4937 at 5690.077 kb on + strand, within Pf6N2E2_4937 at 5690.078 kb on - strand, within Pf6N2E2_4937 at 5690.211 kb on + strand, within Pf6N2E2_4937 at 5690.211 kb on + strand, within Pf6N2E2_4937 at 5690.211 kb on + strand, within Pf6N2E2_4937 at 5690.211 kb on + strand, within Pf6N2E2_4937 at 5690.211 kb on + strand, within Pf6N2E2_4937 at 5690.212 kb on - strand, within Pf6N2E2_4937 at 5690.212 kb on - strand, within Pf6N2E2_4937 at 5690.212 kb on - strand, within Pf6N2E2_4937 at 5690.212 kb on - strand, within Pf6N2E2_4937 at 5690.212 kb on - strand, within Pf6N2E2_4937
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 5,687,617 - Pf6N2E2_4935 0.37 +0.0 5,687,873 + Pf6N2E2_4935 0.59 +1.0 5,687,873 + Pf6N2E2_4935 0.59 -0.8 5,687,874 - Pf6N2E2_4935 0.59 -1.8 5,688,011 - Pf6N2E2_4935 0.72 +0.0 5,688,173 - Pf6N2E2_4935 0.86 +1.0 5,688,366 + -0.5 5,688,367 - -0.2 5,688,367 - +1.0 5,688,406 + +1.0 5,688,407 - -0.3 5,688,407 - +0.0 5,688,407 - -1.3 5,688,429 + +1.0 5,688,429 + +0.0 5,688,429 + -1.5 5,688,429 + -0.7 5,688,430 - -1.0 5,688,430 - +1.0 5,688,430 - +1.0 5,688,472 + +1.0 5,688,473 - +0.0 5,688,504 + -0.6 5,688,504 + +1.0 5,688,504 + +0.2 5,688,504 + -0.8 5,688,505 - -1.5 5,688,505 - +1.0 5,688,505 - +1.0 5,688,505 - +2.0 5,688,505 - +0.0 5,688,505 - -0.5 5,688,505 - +0.0 5,688,545 - +1.0 5,688,601 + +1.0 5,688,601 + +1.0 5,688,601 + +1.0 5,688,601 + -0.5 5,688,601 + +0.0 5,688,601 + +0.0 5,688,601 + +1.0 5,688,601 + +0.0 5,688,601 + +1.0 5,688,601 + +0.0 5,688,602 - +0.0 5,688,602 - +1.0 5,688,602 - -1.0 5,688,602 - +0.0 5,688,602 - +1.0 5,688,602 - +1.0 5,688,602 - -0.3 5,688,602 - -1.1 5,688,602 - +0.0 5,688,621 - +0.0 5,688,869 - Pf6N2E2_4936 0.34 +1.0 5,688,901 + Pf6N2E2_4936 0.38 +1.0 5,688,901 + Pf6N2E2_4936 0.38 -0.6 5,688,901 + Pf6N2E2_4936 0.38 +1.0 5,688,902 - Pf6N2E2_4936 0.38 -1.0 5,688,976 + Pf6N2E2_4936 0.47 -0.3 5,688,976 + Pf6N2E2_4936 0.47 +1.0 5,688,976 + Pf6N2E2_4936 0.47 -0.5 5,688,976 + Pf6N2E2_4936 0.47 -0.6 5,688,977 - Pf6N2E2_4936 0.47 -0.5 5,688,977 - Pf6N2E2_4936 0.47 +1.0 5,688,977 - Pf6N2E2_4936 0.47 +0.0 5,688,977 - Pf6N2E2_4936 0.47 +1.0 5,688,977 - Pf6N2E2_4936 0.47 +0.0 5,688,977 - Pf6N2E2_4936 0.47 -1.5 5,689,060 - Pf6N2E2_4936 0.58 +1.0 5,689,192 + Pf6N2E2_4936 0.75 +1.0 5,689,192 + Pf6N2E2_4936 0.75 -0.3 5,689,192 + Pf6N2E2_4936 0.75 +0.0 5,689,192 + Pf6N2E2_4936 0.75 +0.0 5,689,193 - Pf6N2E2_4936 0.75 -0.7 5,689,193 - Pf6N2E2_4936 0.75 -1.0 5,689,193 - Pf6N2E2_4936 0.75 -0.5 5,689,193 - Pf6N2E2_4936 0.75 +1.0 5,689,193 - Pf6N2E2_4936 0.75 +0.0 5,689,193 - Pf6N2E2_4936 0.75 +0.0 5,689,201 + Pf6N2E2_4936 0.76 +0.0 5,689,201 + Pf6N2E2_4936 0.76 +1.0 5,689,201 + Pf6N2E2_4936 0.76 -0.7 5,689,201 + Pf6N2E2_4936 0.76 +1.0 5,689,202 - Pf6N2E2_4936 0.76 +0.0 5,689,202 - Pf6N2E2_4936 0.76 -1.3 5,689,202 - Pf6N2E2_4936 0.76 -1.5 5,689,211 - Pf6N2E2_4936 0.77 -1.7 5,689,211 - Pf6N2E2_4936 0.77 +1.0 5,689,211 - Pf6N2E2_4936 0.77 +1.0 5,689,211 - Pf6N2E2_4936 0.77 +0.0 5,689,211 - Pf6N2E2_4936 0.77 -1.3 5,689,222 + Pf6N2E2_4936 0.78 -0.9 5,689,222 + Pf6N2E2_4936 0.78 -0.3 5,689,223 - Pf6N2E2_4936 0.78 +1.6 5,689,223 - Pf6N2E2_4936 0.78 +1.0 5,689,223 - Pf6N2E2_4936 0.78 +0.0 5,689,237 + Pf6N2E2_4936 0.80 +1.0 5,689,387 + -1.0 5,689,387 + +0.0 5,689,387 + +1.0 5,689,388 - -0.5 5,689,388 - -0.7 5,689,388 - +0.5 5,689,388 - +1.0 5,689,388 - +1.0 5,689,390 + +0.0 5,689,422 + +0.0 5,689,423 - +0.0 5,689,706 - Pf6N2E2_4937 0.17 +0.0 5,689,709 - Pf6N2E2_4937 0.17 +0.0 5,689,709 - Pf6N2E2_4937 0.17 +0.0 5,689,762 + Pf6N2E2_4937 0.20 -0.4 5,689,762 + Pf6N2E2_4937 0.20 +0.0 5,689,762 + Pf6N2E2_4937 0.20 +0.0 5,689,762 + Pf6N2E2_4937 0.20 +0.0 5,689,763 - Pf6N2E2_4937 0.20 +0.0 5,689,763 - Pf6N2E2_4937 0.20 +1.0 5,689,763 - Pf6N2E2_4937 0.20 +1.0 5,689,763 - Pf6N2E2_4937 0.20 +0.0 5,689,763 - Pf6N2E2_4937 0.20 +1.0 5,689,763 - Pf6N2E2_4937 0.20 +1.0 5,689,875 - Pf6N2E2_4937 0.26 -0.0 5,689,991 - Pf6N2E2_4937 0.33 -0.5 5,689,991 - Pf6N2E2_4937 0.33 +0.0 5,690,003 - Pf6N2E2_4937 0.34 +0.0 5,690,077 + Pf6N2E2_4937 0.38 +0.0 5,690,077 + Pf6N2E2_4937 0.38 -0.5 5,690,077 + Pf6N2E2_4937 0.38 +0.0 5,690,077 + Pf6N2E2_4937 0.38 -0.5 5,690,078 - Pf6N2E2_4937 0.38 +1.0 5,690,211 + Pf6N2E2_4937 0.46 +1.0 5,690,211 + Pf6N2E2_4937 0.46 +0.0 5,690,211 + Pf6N2E2_4937 0.46 +0.0 5,690,211 + Pf6N2E2_4937 0.46 -1.2 5,690,211 + Pf6N2E2_4937 0.46 -0.3 5,690,212 - Pf6N2E2_4937 0.46 +1.0 5,690,212 - Pf6N2E2_4937 0.46 +1.0 5,690,212 - Pf6N2E2_4937 0.46 +0.0 5,690,212 - Pf6N2E2_4937 0.46 +1.0 5,690,212 - Pf6N2E2_4937 0.46 +0.0
Or see this region's nucleotide sequence