Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4741 and Pf6N2E2_4742 are separated by 22 nucleotides Pf6N2E2_4742 and Pf6N2E2_4743 are separated by 80 nucleotides Pf6N2E2_4743 and Pf6N2E2_4744 overlap by 4 nucleotides Pf6N2E2_4744 and Pf6N2E2_4745 are separated by 66 nucleotides Pf6N2E2_4745 and Pf6N2E2_4746 are separated by 4 nucleotides
Pf6N2E2_4741 - hypothetical protein, at 5,478,603 to 5,478,731
_4741
Pf6N2E2_4742 - Glutathione S-transferase family protein, at 5,478,754 to 5,479,383
_4742
Pf6N2E2_4743 - hypothetical protein, at 5,479,464 to 5,479,643
_4743
Pf6N2E2_4744 - putative iron-regulated membrane protein, at 5,479,640 to 5,480,770
_4744
Pf6N2E2_4745 - hypothetical protein, at 5,480,837 to 5,480,995
_4745
Pf6N2E2_4746 - Ferrichrome-iron receptor @ Ferric siderophore receptor, TonB dependent, at 5,481,000 to 5,483,426
_4746
Position (kb) 5479
5480
5481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5478.704 kb on + strand, within Pf6N2E2_4741 at 5478.704 kb on + strand, within Pf6N2E2_4741 at 5478.704 kb on + strand, within Pf6N2E2_4741 at 5478.705 kb on - strand, within Pf6N2E2_4741 at 5478.705 kb on - strand, within Pf6N2E2_4741 at 5478.834 kb on + strand, within Pf6N2E2_4742 at 5478.834 kb on + strand, within Pf6N2E2_4742 at 5478.835 kb on - strand, within Pf6N2E2_4742 at 5479.019 kb on - strand, within Pf6N2E2_4742 at 5479.415 kb on - strand at 5479.419 kb on + strand at 5479.605 kb on - strand, within Pf6N2E2_4743 at 5479.705 kb on - strand at 5479.705 kb on - strand at 5479.705 kb on - strand at 5479.780 kb on - strand, within Pf6N2E2_4744 at 5479.824 kb on + strand, within Pf6N2E2_4744 at 5479.824 kb on + strand, within Pf6N2E2_4744 at 5479.825 kb on - strand, within Pf6N2E2_4744 at 5479.825 kb on - strand, within Pf6N2E2_4744 at 5479.825 kb on - strand, within Pf6N2E2_4744 at 5480.271 kb on + strand, within Pf6N2E2_4744 at 5480.272 kb on - strand, within Pf6N2E2_4744 at 5480.272 kb on - strand, within Pf6N2E2_4744 at 5480.272 kb on - strand, within Pf6N2E2_4744 at 5480.449 kb on + strand, within Pf6N2E2_4744 at 5480.449 kb on + strand, within Pf6N2E2_4744 at 5480.450 kb on - strand, within Pf6N2E2_4744 at 5480.710 kb on + strand at 5480.711 kb on - strand at 5480.812 kb on + strand at 5480.812 kb on + strand at 5480.812 kb on + strand at 5480.813 kb on - strand at 5480.813 kb on - strand at 5481.046 kb on + strand at 5481.046 kb on + strand at 5481.049 kb on + strand at 5481.049 kb on + strand at 5481.049 kb on + strand at 5481.050 kb on - strand at 5481.055 kb on + strand at 5481.055 kb on + strand at 5481.056 kb on - strand at 5481.056 kb on - strand at 5481.079 kb on + strand at 5481.079 kb on + strand at 5481.079 kb on + strand at 5481.080 kb on - strand at 5481.080 kb on - strand at 5481.080 kb on - strand at 5481.157 kb on + strand at 5481.157 kb on + strand at 5481.175 kb on + strand at 5481.176 kb on - strand at 5481.176 kb on - strand at 5481.176 kb on - strand at 5481.176 kb on - strand at 5481.182 kb on + strand at 5481.182 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.184 kb on + strand at 5481.185 kb on - strand at 5481.185 kb on - strand at 5481.185 kb on - strand at 5481.185 kb on - strand at 5481.185 kb on - strand at 5481.226 kb on + strand at 5481.226 kb on + strand at 5481.226 kb on + strand at 5481.226 kb on + strand at 5481.227 kb on - strand at 5481.227 kb on - strand at 5481.227 kb on - strand at 5481.227 kb on - strand at 5481.241 kb on + strand at 5481.241 kb on + strand at 5481.241 kb on + strand at 5481.241 kb on + strand at 5481.242 kb on - strand at 5481.242 kb on - strand at 5481.242 kb on - strand at 5481.242 kb on - strand at 5481.242 kb on - strand at 5481.242 kb on - strand at 5481.242 kb on - strand at 5481.296 kb on - strand, within Pf6N2E2_4746 at 5481.296 kb on - strand, within Pf6N2E2_4746 at 5481.296 kb on - strand, within Pf6N2E2_4746 at 5481.388 kb on + strand, within Pf6N2E2_4746 at 5481.388 kb on + strand, within Pf6N2E2_4746 at 5481.388 kb on + strand, within Pf6N2E2_4746 at 5481.388 kb on + strand, within Pf6N2E2_4746 at 5481.389 kb on - strand, within Pf6N2E2_4746 at 5481.389 kb on - strand, within Pf6N2E2_4746 at 5481.389 kb on - strand, within Pf6N2E2_4746 at 5481.389 kb on - strand, within Pf6N2E2_4746 at 5481.394 kb on + strand, within Pf6N2E2_4746 at 5481.394 kb on + strand, within Pf6N2E2_4746 at 5481.394 kb on + strand, within Pf6N2E2_4746 at 5481.394 kb on + strand, within Pf6N2E2_4746 at 5481.394 kb on + strand, within Pf6N2E2_4746 at 5481.395 kb on - strand, within Pf6N2E2_4746 at 5481.395 kb on - strand, within Pf6N2E2_4746 at 5481.395 kb on - strand, within Pf6N2E2_4746 at 5481.395 kb on - strand, within Pf6N2E2_4746 at 5481.457 kb on - strand, within Pf6N2E2_4746 at 5481.462 kb on + strand, within Pf6N2E2_4746 at 5481.462 kb on + strand, within Pf6N2E2_4746 at 5481.462 kb on + strand, within Pf6N2E2_4746 at 5481.462 kb on + strand, within Pf6N2E2_4746 at 5481.463 kb on - strand, within Pf6N2E2_4746 at 5481.463 kb on - strand, within Pf6N2E2_4746 at 5481.463 kb on - strand, within Pf6N2E2_4746 at 5481.568 kb on + strand, within Pf6N2E2_4746 at 5481.568 kb on + strand, within Pf6N2E2_4746 at 5481.568 kb on + strand, within Pf6N2E2_4746 at 5481.569 kb on - strand, within Pf6N2E2_4746 at 5481.569 kb on - strand, within Pf6N2E2_4746 at 5481.569 kb on - strand, within Pf6N2E2_4746 at 5481.569 kb on - strand, within Pf6N2E2_4746 at 5481.673 kb on + strand, within Pf6N2E2_4746 at 5481.700 kb on + strand, within Pf6N2E2_4746 at 5481.700 kb on + strand, within Pf6N2E2_4746
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 5,478,704 + Pf6N2E2_4741 0.78 +1.0 5,478,704 + Pf6N2E2_4741 0.78 -0.4 5,478,704 + Pf6N2E2_4741 0.78 +0.0 5,478,705 - Pf6N2E2_4741 0.79 -0.4 5,478,705 - Pf6N2E2_4741 0.79 +0.0 5,478,834 + Pf6N2E2_4742 0.13 +1.0 5,478,834 + Pf6N2E2_4742 0.13 -1.0 5,478,835 - Pf6N2E2_4742 0.13 -0.5 5,479,019 - Pf6N2E2_4742 0.42 -0.3 5,479,415 - -0.3 5,479,419 + -2.2 5,479,605 - Pf6N2E2_4743 0.78 +1.0 5,479,705 - -0.0 5,479,705 - -1.0 5,479,705 - +1.0 5,479,780 - Pf6N2E2_4744 0.12 -0.5 5,479,824 + Pf6N2E2_4744 0.16 +0.3 5,479,824 + Pf6N2E2_4744 0.16 -0.8 5,479,825 - Pf6N2E2_4744 0.16 -0.3 5,479,825 - Pf6N2E2_4744 0.16 -1.0 5,479,825 - Pf6N2E2_4744 0.16 -1.3 5,480,271 + Pf6N2E2_4744 0.56 +1.0 5,480,272 - Pf6N2E2_4744 0.56 +1.0 5,480,272 - Pf6N2E2_4744 0.56 +1.0 5,480,272 - Pf6N2E2_4744 0.56 -0.5 5,480,449 + Pf6N2E2_4744 0.72 +0.0 5,480,449 + Pf6N2E2_4744 0.72 +0.0 5,480,450 - Pf6N2E2_4744 0.72 -0.6 5,480,710 + -3.2 5,480,711 - +0.0 5,480,812 + -0.7 5,480,812 + +1.0 5,480,812 + +0.0 5,480,813 - -1.0 5,480,813 - +0.0 5,481,046 + -0.1 5,481,046 + -0.5 5,481,049 + -1.0 5,481,049 + -1.0 5,481,049 + -1.5 5,481,050 - +1.0 5,481,055 + +1.0 5,481,055 + -0.7 5,481,056 - +1.0 5,481,056 - +1.0 5,481,079 + +1.0 5,481,079 + -0.3 5,481,079 + +0.0 5,481,080 - -0.5 5,481,080 - +0.0 5,481,080 - +1.0 5,481,157 + +0.0 5,481,157 + +1.0 5,481,175 + +1.0 5,481,176 - +1.0 5,481,176 - -0.6 5,481,176 - +1.0 5,481,176 - -1.4 5,481,182 + -0.3 5,481,182 + +1.0 5,481,184 + -0.5 5,481,184 + -0.4 5,481,184 + +1.0 5,481,184 + +0.0 5,481,184 + +1.0 5,481,184 + +0.0 5,481,184 + +0.0 5,481,184 + +1.0 5,481,184 + +1.0 5,481,184 + +1.0 5,481,185 - -1.3 5,481,185 - +0.0 5,481,185 - +0.5 5,481,185 - +1.0 5,481,185 - -0.8 5,481,226 + +1.0 5,481,226 + -2.2 5,481,226 + -1.5 5,481,226 + +1.0 5,481,227 - +1.0 5,481,227 - -0.5 5,481,227 - +1.0 5,481,227 - -0.5 5,481,241 + +1.0 5,481,241 + +0.5 5,481,241 + +1.0 5,481,241 + +1.0 5,481,242 - +0.0 5,481,242 - -0.1 5,481,242 - +1.0 5,481,242 - +1.0 5,481,242 - +0.0 5,481,242 - +0.0 5,481,242 - -1.8 5,481,296 - Pf6N2E2_4746 0.12 +0.0 5,481,296 - Pf6N2E2_4746 0.12 +1.0 5,481,296 - Pf6N2E2_4746 0.12 +0.0 5,481,388 + Pf6N2E2_4746 0.16 +1.0 5,481,388 + Pf6N2E2_4746 0.16 +1.0 5,481,388 + Pf6N2E2_4746 0.16 +0.0 5,481,388 + Pf6N2E2_4746 0.16 -0.7 5,481,389 - Pf6N2E2_4746 0.16 +2.0 5,481,389 - Pf6N2E2_4746 0.16 +0.0 5,481,389 - Pf6N2E2_4746 0.16 +1.0 5,481,389 - Pf6N2E2_4746 0.16 +1.0 5,481,394 + Pf6N2E2_4746 0.16 -0.7 5,481,394 + Pf6N2E2_4746 0.16 +1.0 5,481,394 + Pf6N2E2_4746 0.16 +1.0 5,481,394 + Pf6N2E2_4746 0.16 +0.0 5,481,394 + Pf6N2E2_4746 0.16 +0.0 5,481,395 - Pf6N2E2_4746 0.16 +1.0 5,481,395 - Pf6N2E2_4746 0.16 +0.0 5,481,395 - Pf6N2E2_4746 0.16 -1.5 5,481,395 - Pf6N2E2_4746 0.16 +0.0 5,481,457 - Pf6N2E2_4746 0.19 -0.5 5,481,462 + Pf6N2E2_4746 0.19 +0.0 5,481,462 + Pf6N2E2_4746 0.19 +1.0 5,481,462 + Pf6N2E2_4746 0.19 +1.0 5,481,462 + Pf6N2E2_4746 0.19 +1.0 5,481,463 - Pf6N2E2_4746 0.19 +1.0 5,481,463 - Pf6N2E2_4746 0.19 -0.5 5,481,463 - Pf6N2E2_4746 0.19 -0.5 5,481,568 + Pf6N2E2_4746 0.23 +1.0 5,481,568 + Pf6N2E2_4746 0.23 -0.5 5,481,568 + Pf6N2E2_4746 0.23 -1.1 5,481,569 - Pf6N2E2_4746 0.23 -1.3 5,481,569 - Pf6N2E2_4746 0.23 +1.0 5,481,569 - Pf6N2E2_4746 0.23 -0.7 5,481,569 - Pf6N2E2_4746 0.23 +1.0 5,481,673 + Pf6N2E2_4746 0.28 +1.0 5,481,700 + Pf6N2E2_4746 0.29 +1.0 5,481,700 + Pf6N2E2_4746 0.29 -0.7
Or see this region's nucleotide sequence