Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4428

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
5,157,911	-				-1.6
5,157,911	-				+1.1
5,157,998	+				-0.5
5,157,998	+				-1.5
5,157,998	+				+1.1
5,157,999	-		Pf6N2E2_4426	0.10	-0.1
5,157,999	-		Pf6N2E2_4426	0.10	+0.4
5,157,999	-		Pf6N2E2_4426	0.10	-0.5
5,157,999	-		Pf6N2E2_4426	0.10	+0.1
5,157,999	-		Pf6N2E2_4426	0.10	+1.1
5,158,016	+		Pf6N2E2_4426	0.17	-0.9
5,158,016	+		Pf6N2E2_4426	0.17	+0.1
5,158,016	+		Pf6N2E2_4426	0.17	-0.6
5,158,016	+		Pf6N2E2_4426	0.17	+0.1
5,158,219	+				-0.9
5,158,219	+				+1.1
5,158,219	+				+0.0
5,158,219	+				+0.1
5,158,219	+				-0.5
5,158,220	-				-1.4
5,158,220	-				+0.1
5,158,220	-				-0.5
5,158,220	-				+1.1
5,158,220	-				+1.1
5,158,220	-				-1.5
5,158,220	-				-0.6
5,158,220	-				-0.9
5,158,220	-				+1.1
5,158,220	-				+0.1
5,158,238	-				+1.1
5,158,261	+				-0.5
5,158,261	+				+1.1
5,158,261	+				+0.1
5,158,261	+				+0.1
5,158,262	-				-0.9
5,158,262	-				+1.1
5,158,262	-				+1.1
5,158,262	-				+1.1
5,158,377	+				+1.1
5,158,377	+				+1.1
5,158,377	+				+0.1
5,158,377	+				+0.3
5,158,378	-				+0.1
5,158,378	-				+0.9
5,158,378	-				+0.1
5,158,446	+				+0.1
5,158,446	+				-1.2
5,158,494	+		Pf6N2E2_4427	0.17	-1.4
5,158,591	-		Pf6N2E2_4427	0.51	+1.1
5,158,761	-				+0.1
5,158,761	-				+0.1
5,158,761	-				+1.1
5,158,761	-				+1.1
5,158,797	+				+1.1
5,158,797	+				-0.9
5,158,798	-				+0.1
5,158,810	+				+0.1
5,158,810	+				+1.1
5,158,810	+				+1.1
5,158,810	+				-0.3
5,158,810	+				+0.6
5,158,810	+				+1.7
5,158,810	+				+0.1
5,158,810	+				+0.1
5,158,811	-				+1.1
5,158,812	+				+0.1
5,158,883	+				-0.5
5,158,883	+				-0.9
5,158,884	-				+1.1
5,158,884	-				-1.1
5,158,887	+				-2.2
5,158,887	+				+1.1
5,158,887	+				+1.1
5,158,888	-				+0.1
5,158,890	+				+0.6
5,158,890	+				+0.1
5,158,890	+				-0.5
5,158,890	+				-1.9
5,158,890	+				-0.5
5,158,890	+				+0.1
5,158,891	-				-0.9
5,158,891	-				+0.1
5,158,891	-				+1.1
5,158,891	-				-1.1
5,158,891	-				-0.1
5,158,950	+		Pf6N2E2_4428	0.15	+0.7
5,158,950	+		Pf6N2E2_4428	0.15	-0.9
5,158,951	-		Pf6N2E2_4428	0.15	+1.1
5,159,028	-		Pf6N2E2_4428	0.26	+1.1
5,159,028	-		Pf6N2E2_4428	0.26	+1.1
5,159,055	+		Pf6N2E2_4428	0.30	+1.1
5,159,056	-		Pf6N2E2_4428	0.31	+0.1
5,159,056	-		Pf6N2E2_4428	0.31	+1.1
5,159,056	-		Pf6N2E2_4428	0.31	-1.4
5,159,148	+		Pf6N2E2_4428	0.45	+1.1
5,159,148	+		Pf6N2E2_4428	0.45	-0.4
5,159,148	+		Pf6N2E2_4428	0.45	+1.1
5,159,148	+		Pf6N2E2_4428	0.45	+0.1
5,159,148	+		Pf6N2E2_4428	0.45	-1.2
5,159,149	-		Pf6N2E2_4428	0.45	+1.1
5,159,175	+		Pf6N2E2_4428	0.49	+1.1
5,159,286	+		Pf6N2E2_4428	0.65	-0.5
5,159,287	-		Pf6N2E2_4428	0.66	+0.1
5,159,287	-		Pf6N2E2_4428	0.66	-0.1
5,159,322	+		Pf6N2E2_4428	0.71	-0.5
5,159,322	+		Pf6N2E2_4428	0.71	+0.1
5,159,323	-		Pf6N2E2_4428	0.71	+0.1
5,159,323	-		Pf6N2E2_4428	0.71	-0.4
5,159,323	-		Pf6N2E2_4428	0.71	-0.9
5,159,323	-		Pf6N2E2_4428	0.71	+0.1
5,159,331	+		Pf6N2E2_4428	0.72	-1.2
5,159,332	-		Pf6N2E2_4428	0.72	+0.1
5,159,332	-		Pf6N2E2_4428	0.72	+1.1
5,159,538	+				-0.5
5,159,572	+				+1.1
5,159,572	+				+1.1
5,159,572	+				-0.9
5,159,572	+				-0.5
5,159,573	-				+1.1
5,159,573	-				+1.1
5,159,573	-				-0.6
5,159,573	-				+1.1
5,159,573	-				-1.2
5,159,573	-				+1.1