Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4254

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,949,993	+		Pf6N2E2_4253	0.15	+1.1
4,950,048	+		Pf6N2E2_4253	0.20	+0.1
4,950,049	-		Pf6N2E2_4253	0.20	+0.4
4,950,162	+		Pf6N2E2_4253	0.31	+1.1
4,950,162	+		Pf6N2E2_4253	0.31	+1.1
4,950,162	+		Pf6N2E2_4253	0.31	+1.1
4,950,162	+		Pf6N2E2_4253	0.31	+1.1
4,950,163	-		Pf6N2E2_4253	0.31	+0.1
4,950,163	-		Pf6N2E2_4253	0.31	+1.1
4,950,163	-		Pf6N2E2_4253	0.31	+1.1
4,950,223	+		Pf6N2E2_4253	0.37	+0.1
4,950,223	+		Pf6N2E2_4253	0.37	-1.1
4,950,223	+		Pf6N2E2_4253	0.37	-0.5
4,950,223	+		Pf6N2E2_4253	0.37	-1.3
4,950,223	+		Pf6N2E2_4253	0.37	-0.7
4,950,378	+		Pf6N2E2_4253	0.51	+0.1
4,950,460	+		Pf6N2E2_4253	0.59	+0.5
4,950,460	+		Pf6N2E2_4253	0.59	-1.5
4,950,460	+		Pf6N2E2_4253	0.59	-0.3
4,950,461	-		Pf6N2E2_4253	0.59	+0.1
4,950,461	-		Pf6N2E2_4253	0.59	+1.1
4,950,461	-		Pf6N2E2_4253	0.59	-1.7
4,950,689	+		Pf6N2E2_4253	0.81	+1.1
4,950,689	+		Pf6N2E2_4253	0.81	-0.5
4,950,689	+		Pf6N2E2_4253	0.81	-1.3
4,950,690	-		Pf6N2E2_4253	0.81	+1.1
4,950,690	-		Pf6N2E2_4253	0.81	-0.5
4,950,706	+		Pf6N2E2_4253	0.83	+1.1
4,950,706	+		Pf6N2E2_4253	0.83	-0.7
4,950,706	+		Pf6N2E2_4253	0.83	-0.6
4,950,706	+		Pf6N2E2_4253	0.83	-0.0
4,950,706	+		Pf6N2E2_4253	0.83	-0.4
4,950,706	+		Pf6N2E2_4253	0.83	+0.1
4,950,707	-		Pf6N2E2_4253	0.83	-0.5
4,950,707	-		Pf6N2E2_4253	0.83	+0.1
4,950,707	-		Pf6N2E2_4253	0.83	-1.3
4,950,707	-		Pf6N2E2_4253	0.83	+1.1
4,950,707	-		Pf6N2E2_4253	0.83	-0.7
4,950,707	-		Pf6N2E2_4253	0.83	+0.1
4,950,707	-		Pf6N2E2_4253	0.83	-0.4
4,950,739	+		Pf6N2E2_4253	0.86	+1.1
4,950,740	-		Pf6N2E2_4253	0.86	+1.1
4,950,740	-		Pf6N2E2_4253	0.86	+0.5
4,950,740	-		Pf6N2E2_4253	0.86	+0.1
4,950,910	+				-0.5
4,950,957	+				+0.1
4,950,958	-				-0.5
4,951,245	+		Pf6N2E2_4254	0.35	-0.9
4,951,246	-		Pf6N2E2_4254	0.35	-0.5
4,951,249	+		Pf6N2E2_4254	0.35	+0.1
4,951,249	+		Pf6N2E2_4254	0.35	+0.1
4,951,250	-		Pf6N2E2_4254	0.35	-1.5
4,951,250	-		Pf6N2E2_4254	0.35	+0.1
4,951,296	+		Pf6N2E2_4254	0.40	+1.1
4,951,297	-		Pf6N2E2_4254	0.40	-1.6
4,951,297	-		Pf6N2E2_4254	0.40	+0.1
4,951,315	-		Pf6N2E2_4254	0.41	+1.1
4,952,040	+				+1.1
4,952,040	+				+0.1
4,952,040	+				-1.1
4,952,085	+				-0.9
4,952,085	+				+1.1
4,952,086	-				+1.1
4,952,086	-				-0.9
4,952,086	-				+1.1
4,952,138	+		Pf6N2E2_4255	0.11	+0.1
4,952,138	+		Pf6N2E2_4255	0.11	+1.1
4,952,676	-		Pf6N2E2_4255	0.39	+1.1
4,952,687	+		Pf6N2E2_4255	0.40	-0.3
4,952,687	+		Pf6N2E2_4255	0.40	-0.5
4,952,687	+		Pf6N2E2_4255	0.40	-0.5
4,952,688	-		Pf6N2E2_4255	0.40	+1.1
4,952,688	-		Pf6N2E2_4255	0.40	+0.1
4,952,688	-		Pf6N2E2_4255	0.40	+0.8
4,952,688	-		Pf6N2E2_4255	0.40	-0.1
4,952,908	+		Pf6N2E2_4255	0.51	+1.1
4,952,909	-		Pf6N2E2_4255	0.51	+1.1
4,952,917	+		Pf6N2E2_4255	0.52	+1.1
4,952,918	-		Pf6N2E2_4255	0.52	+1.1
4,952,918	-		Pf6N2E2_4255	0.52	+1.1
4,952,927	+		Pf6N2E2_4255	0.52	+1.1
4,952,927	+		Pf6N2E2_4255	0.52	+0.1
4,952,927	+		Pf6N2E2_4255	0.52	+0.1
4,952,927	+		Pf6N2E2_4255	0.52	+1.1
4,952,928	-		Pf6N2E2_4255	0.52	-0.5
4,952,928	-		Pf6N2E2_4255	0.52	-0.5