Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4105

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,783,514	+		Pf6N2E2_4103	0.56	-0.5
4,783,514	+		Pf6N2E2_4103	0.56	-1.1
4,783,514	+		Pf6N2E2_4103	0.56	-1.3
4,783,514	+		Pf6N2E2_4103	0.56	-0.4
4,783,514	+		Pf6N2E2_4103	0.56	+1.0
4,783,514	+		Pf6N2E2_4103	0.56	+0.0
4,783,514	+		Pf6N2E2_4103	0.56	+1.3
4,783,515	-		Pf6N2E2_4103	0.56	+0.0
4,783,515	-		Pf6N2E2_4103	0.56	-0.5
4,783,515	-		Pf6N2E2_4103	0.56	-0.8
4,783,772	+				-0.8
4,783,772	+				-0.1
4,783,932	+		Pf6N2E2_4104	0.22	-0.3
4,783,932	+		Pf6N2E2_4104	0.22	+0.0
4,783,932	+		Pf6N2E2_4104	0.22	+0.0
4,783,932	+		Pf6N2E2_4104	0.22	-1.5
4,783,933	-		Pf6N2E2_4104	0.22	+1.0
4,783,933	-		Pf6N2E2_4104	0.22	-2.1
4,783,933	-		Pf6N2E2_4104	0.22	+1.0
4,783,933	-		Pf6N2E2_4104	0.22	+0.0
4,783,933	-		Pf6N2E2_4104	0.22	-0.5
4,783,933	-		Pf6N2E2_4104	0.22	+1.0
4,783,933	-		Pf6N2E2_4104	0.22	-1.6
4,783,933	-		Pf6N2E2_4104	0.22	-1.1
4,783,933	-		Pf6N2E2_4104	0.22	+0.0
4,783,933	-		Pf6N2E2_4104	0.22	+1.0
4,783,968	+		Pf6N2E2_4104	0.28	-0.5
4,783,969	-		Pf6N2E2_4104	0.28	+1.6
4,783,969	-		Pf6N2E2_4104	0.28	+0.0
4,784,018	-		Pf6N2E2_4104	0.36	+0.0
4,784,094	+		Pf6N2E2_4104	0.49	+0.0
4,784,094	+		Pf6N2E2_4104	0.49	+0.0
4,784,185	-		Pf6N2E2_4104	0.64	-0.5
4,784,248	-		Pf6N2E2_4104	0.75	+0.6
4,784,284	+		Pf6N2E2_4104	0.81	-0.3
4,784,284	+		Pf6N2E2_4104	0.81	-0.8
4,784,284	+		Pf6N2E2_4104	0.81	+0.0
4,784,284	+		Pf6N2E2_4104	0.81	+0.0
4,784,284	+		Pf6N2E2_4104	0.81	-1.2
4,784,284	+		Pf6N2E2_4104	0.81	+0.0
4,784,284	+		Pf6N2E2_4104	0.81	+0.1
4,784,285	-		Pf6N2E2_4104	0.81	+0.0
4,784,285	-		Pf6N2E2_4104	0.81	+1.0
4,784,285	-		Pf6N2E2_4104	0.81	+1.0
4,784,285	-		Pf6N2E2_4104	0.81	+1.0
4,784,285	-		Pf6N2E2_4104	0.81	+1.0
4,784,285	-		Pf6N2E2_4104	0.81	-1.0
4,784,285	-		Pf6N2E2_4104	0.81	+0.1
4,784,479	+				+1.0
4,784,479	+				+0.0
4,784,479	+				-0.4
4,784,530	+		Pf6N2E2_4105	0.11	-0.5
4,784,530	+		Pf6N2E2_4105	0.11	+1.0
4,784,642	-		Pf6N2E2_4105	0.22	+0.0
4,784,642	-		Pf6N2E2_4105	0.22	-0.5
4,784,672	+		Pf6N2E2_4105	0.25	+0.0
4,784,989	+		Pf6N2E2_4105	0.54	+0.0
4,785,094	+		Pf6N2E2_4105	0.64	-2.6
4,785,094	+		Pf6N2E2_4105	0.64	+0.0
4,785,094	+		Pf6N2E2_4105	0.64	+0.0
4,785,094	+		Pf6N2E2_4105	0.64	+0.5
4,785,095	-		Pf6N2E2_4105	0.64	+0.0
4,785,176	+		Pf6N2E2_4105	0.71	-1.0
4,785,364	+		Pf6N2E2_4105	0.89	+2.0
4,785,364	+		Pf6N2E2_4105	0.89	+0.0
4,785,364	+		Pf6N2E2_4105	0.89	-0.6
4,785,364	+		Pf6N2E2_4105	0.89	+0.0
4,785,365	-		Pf6N2E2_4105	0.89	-1.0
4,785,365	-		Pf6N2E2_4105	0.89	-2.0
4,785,365	-		Pf6N2E2_4105	0.89	+1.0
4,785,452	+				-0.6
4,785,453	-				+0.0
4,785,453	-				-0.6
4,785,456	+				-1.5
4,785,456	+				-1.0
4,785,456	+				-0.5
4,785,456	+				-0.7
4,785,456	+				-0.5
4,785,456	+				+0.0
4,785,457	-				-3.2
4,785,457	-				-1.0
4,785,457	-				+1.0
4,785,457	-				+0.5
4,785,457	-				+1.6
4,785,457	-				+1.0
4,785,457	-				-0.4
4,785,457	-				-1.3
4,785,457	-				-0.1
4,785,457	-				+1.0
4,785,458	+				+1.0
4,785,458	+				-0.5
4,785,458	+				+0.0
4,785,458	+				+1.0
4,785,458	+				-0.5
4,785,458	+				-0.6
4,785,459	-				+1.0
4,785,459	-				+0.3
4,785,522	+				+1.0
4,785,523	-				+0.0
4,785,523	-				+1.0
4,785,626	-		Pf6N2E2_4106	0.17	+1.0
4,785,682	+		Pf6N2E2_4106	0.23	+0.0
4,785,682	+		Pf6N2E2_4106	0.23	+1.0
4,785,682	+		Pf6N2E2_4106	0.23	-0.5
4,785,682	+		Pf6N2E2_4106	0.23	-0.8
4,785,682	+		Pf6N2E2_4106	0.23	+1.0
4,785,682	+		Pf6N2E2_4106	0.23	+1.0
4,785,682	+		Pf6N2E2_4106	0.23	+2.4
4,785,683	-		Pf6N2E2_4106	0.23	+1.0
4,785,683	-		Pf6N2E2_4106	0.23	-0.5
4,785,683	-		Pf6N2E2_4106	0.23	+1.0
4,785,683	-		Pf6N2E2_4106	0.23	+1.0
4,785,722	+		Pf6N2E2_4106	0.28	-0.2
4,785,723	-		Pf6N2E2_4106	0.28	+1.0
4,785,723	-		Pf6N2E2_4106	0.28	-0.4
4,785,876	+		Pf6N2E2_4106	0.45	+1.0
4,785,877	-		Pf6N2E2_4106	0.45	-2.0
4,785,877	-		Pf6N2E2_4106	0.45	-0.5
4,785,877	-		Pf6N2E2_4106	0.45	+0.0
4,786,068	+		Pf6N2E2_4106	0.66	+1.0
4,786,069	-		Pf6N2E2_4106	0.66	+0.0
4,786,116	+		Pf6N2E2_4106	0.71	-0.7
4,786,117	-		Pf6N2E2_4106	0.71	-0.8
4,786,117	-		Pf6N2E2_4106	0.71	-0.5
4,786,130	+		Pf6N2E2_4106	0.73	+1.0
4,786,131	-		Pf6N2E2_4106	0.73	-0.5
4,786,140	+		Pf6N2E2_4106	0.74	-0.5
4,786,140	+		Pf6N2E2_4106	0.74	-0.1
4,786,140	+		Pf6N2E2_4106	0.74	+0.0
4,786,141	-		Pf6N2E2_4106	0.74	-0.1
4,786,141	-		Pf6N2E2_4106	0.74	-1.4
4,786,141	-		Pf6N2E2_4106	0.74	-0.5
4,786,204	-		Pf6N2E2_4106	0.81	+0.0
4,786,260	+		Pf6N2E2_4106	0.87	+1.0
4,786,261	-		Pf6N2E2_4106	0.87	+1.0
4,786,261	-		Pf6N2E2_4106	0.87	+0.0
4,786,261	-		Pf6N2E2_4106	0.87	-1.0
4,786,292	+				-0.5
4,786,292	+				-0.1
4,786,293	-				-1.1
4,786,293	-				+1.0
4,786,302	+				-0.7
4,786,302	+				+0.0
4,786,302	+				-1.0
4,786,302	+				+1.0
4,786,303	-				+0.0
4,786,303	-				+0.0
4,786,303	-				+1.0
4,786,303	-				+1.0
4,786,307	+				+0.0
4,786,307	+				-1.0
4,786,308	-				+0.0
4,786,308	-				-0.5
4,786,308	-				-0.7
4,786,308	-				-0.6
4,786,311	+				-2.9
4,786,311	+				-0.7
4,786,312	-				+0.0
4,786,312	-				+1.0
4,786,312	-				+0.0
4,786,314	+				+1.0
4,786,314	+				+1.0
4,786,314	+				-0.5
4,786,315	-				+1.0
4,786,315	-				+0.0
4,786,315	-				+1.0
4,786,345	+				+0.0
4,786,345	+				-0.5
4,786,345	+				-0.5
4,786,345	+				-0.5
4,786,346	-				+0.0
4,786,346	-				+0.0
4,786,346	-				+0.0
4,786,346	-				-0.5
4,786,346	-				-0.5
4,786,346	-				-1.0
4,786,353	+				-1.5
4,786,353	+				+1.0
4,786,353	+				-0.5
4,786,353	+				+0.0
4,786,353	+				+2.0
4,786,353	+				+0.0
4,786,353	+				+0.3
4,786,353	+				-0.8
4,786,353	+				+1.0
4,786,353	+				+0.0
4,786,353	+				+1.0
4,786,353	+				+0.0
4,786,353	+				+0.0
4,786,353	+				+1.0
4,786,353	+				+1.0
4,786,354	-				-1.0
4,786,354	-				-0.5
4,786,354	-				+0.0
4,786,354	-				-1.6
4,786,354	-				+0.0
4,786,354	-				-0.5
4,786,354	-				+1.0
4,786,354	-				-0.5
4,786,354	-				-1.3
4,786,354	-				-0.6
4,786,354	-				-1.9
4,786,354	-				+0.0
4,786,354	-				+0.0
4,786,357	+				-0.5
4,786,357	+				+0.0
4,786,358	-				+0.0
4,786,358	-				-0.5
4,786,358	-				-0.2
4,786,358	-				-1.1
4,786,358	-				-1.5
4,786,369	+				+1.0
4,786,369	+				+0.0
4,786,370	-				-0.8
4,786,370	-				-1.0
4,786,370	-				+0.0