Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3990

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,657,686	-				+0.0
4,657,686	-				+0.0
4,657,785	+				+0.0
4,657,785	+				-1.3
4,657,785	+				-0.6
4,657,785	+				-1.9
4,657,786	-				+0.0
4,657,947	+		Pf6N2E2_3989	0.22	-0.9
4,657,947	+		Pf6N2E2_3989	0.22	-0.8
4,657,948	-		Pf6N2E2_3989	0.22	-1.0
4,657,948	-		Pf6N2E2_3989	0.22	+1.0
4,658,120	+		Pf6N2E2_3989	0.59	+1.0
4,658,121	-		Pf6N2E2_3989	0.60	+1.0
4,658,121	-		Pf6N2E2_3989	0.60	+1.0
4,658,335	+				-0.6
4,658,335	+				-0.6
4,658,335	+				-0.6
4,658,336	-				+0.0
4,658,336	-				-0.6
4,658,336	-				+1.0
4,658,336	-				+0.2
4,658,336	-				-0.4
4,658,336	-				+0.0
4,658,697	+				-0.7
4,658,698	-				+1.0
4,659,015	+		Pf6N2E2_3990	0.18	+1.0
4,659,015	+		Pf6N2E2_3990	0.18	+1.0
4,659,676	+		Pf6N2E2_3990	0.53	-0.4
4,659,677	-		Pf6N2E2_3990	0.53	+1.0
4,659,770	+		Pf6N2E2_3990	0.58	+0.0
4,659,771	-		Pf6N2E2_3990	0.58	-0.6
4,659,803	+		Pf6N2E2_3990	0.60	+0.0
4,659,804	-		Pf6N2E2_3990	0.60	+0.0
4,659,804	-		Pf6N2E2_3990	0.60	+1.0
4,659,804	-		Pf6N2E2_3990	0.60	+1.0
4,659,804	-		Pf6N2E2_3990	0.60	-1.0
4,659,804	-		Pf6N2E2_3990	0.60	+1.0
4,659,837	+		Pf6N2E2_3990	0.61	-0.6
4,659,914	+		Pf6N2E2_3990	0.65	+1.0
4,659,914	+		Pf6N2E2_3990	0.65	-0.6
4,659,915	-		Pf6N2E2_3990	0.65	-0.9
4,659,915	-		Pf6N2E2_3990	0.65	-0.8
4,660,139	+		Pf6N2E2_3990	0.77	+1.0
4,660,139	+		Pf6N2E2_3990	0.77	-0.6
4,660,139	+		Pf6N2E2_3990	0.77	-1.0
4,660,139	+		Pf6N2E2_3990	0.77	+0.0
4,660,140	-		Pf6N2E2_3990	0.77	+0.0
4,660,162	-		Pf6N2E2_3990	0.79	-1.0
4,660,184	+		Pf6N2E2_3990	0.80	+0.0
4,660,184	+		Pf6N2E2_3990	0.80	+0.0
4,660,268	+		Pf6N2E2_3990	0.84	-0.6
4,660,268	+		Pf6N2E2_3990	0.84	+1.0
4,660,268	+		Pf6N2E2_3990	0.84	-1.1
4,660,268	+		Pf6N2E2_3990	0.84	-0.5
4,660,269	-		Pf6N2E2_3990	0.84	+2.0
4,660,332	+		Pf6N2E2_3990	0.88	-0.6
4,660,333	-		Pf6N2E2_3990	0.88	-0.6
4,660,475	+				-0.5
4,660,475	+				+0.0
4,660,476	-				+0.0
4,660,484	+				+0.0
4,660,484	+				+1.0
4,660,484	+				+1.0
4,660,485	-				+0.0
4,660,485	-				-1.1
4,660,485	-				+1.0
4,660,485	-				-0.8
4,660,485	-				+0.0
4,660,485	-				-0.6
4,660,555	+				-0.6
4,660,555	+				-1.0
4,660,577	+				+1.0
4,660,577	+				-0.5
4,660,578	-				+1.0
4,660,621	+				+1.0
4,660,621	+				+1.0
4,660,621	+				-0.8
4,660,622	-				-1.0
4,660,622	-				+1.0
4,660,643	+				+1.0
4,660,644	-				+1.0
4,660,666	+				+1.0
4,660,666	+				+1.0
4,660,666	+				+1.0
4,660,666	+				+1.0
4,660,666	+				-0.2
4,660,667	-				+1.0
4,660,667	-				-1.3
4,660,667	-				-0.6
4,660,667	-				-0.6
4,660,667	-				-1.4
4,660,667	-				+1.0
4,660,667	-				+1.0
4,660,667	-				-1.0
4,660,667	-				-0.6
4,660,688	+				+0.4
4,660,689	-				-0.6
4,660,689	-				-0.6
4,660,689	-				+1.0
4,660,694	+				+1.0
4,660,694	+				+1.0
4,660,695	-				+2.0
4,660,695	-				-1.0
4,660,695	-				+0.0
4,660,699	-				+0.0
4,660,784	-				-1.6
4,660,840	-				-0.8
4,660,850	+				+1.0
4,660,850	+				+0.0
4,660,850	+				+0.0
4,660,851	-				-0.8
4,660,851	-				+0.0
4,660,876	+		Pf6N2E2_3991	0.12	+1.0
4,660,876	+		Pf6N2E2_3991	0.12	+1.0
4,660,876	+		Pf6N2E2_3991	0.12	-1.6
4,660,877	-		Pf6N2E2_3991	0.12	+1.4
4,661,057	+		Pf6N2E2_3991	0.48	-0.4
4,661,057	+		Pf6N2E2_3991	0.48	+0.0
4,661,057	+		Pf6N2E2_3991	0.48	+0.0
4,661,058	-		Pf6N2E2_3991	0.48	-0.6
4,661,058	-		Pf6N2E2_3991	0.48	-0.6
4,661,070	+		Pf6N2E2_3991	0.50	-0.6
4,661,070	+		Pf6N2E2_3991	0.50	-0.6
4,661,071	-		Pf6N2E2_3991	0.51	+1.0
4,661,071	-		Pf6N2E2_3991	0.51	-0.3
4,661,071	-		Pf6N2E2_3991	0.51	+1.0
4,661,071	-		Pf6N2E2_3991	0.51	+0.0
4,661,071	-		Pf6N2E2_3991	0.51	+0.4
4,661,071	-		Pf6N2E2_3991	0.51	-2.3
4,661,216	+		Pf6N2E2_3991	0.80	-1.3
4,661,216	+		Pf6N2E2_3991	0.80	+0.6
4,661,217	-		Pf6N2E2_3991	0.80	-0.6
4,661,217	-		Pf6N2E2_3991	0.80	+0.3
4,661,217	-		Pf6N2E2_3991	0.80	+1.0
4,661,217	-		Pf6N2E2_3991	0.80	+1.0
4,661,268	-				+0.0
4,661,285	+				+1.0
4,661,285	+				-0.9
4,661,286	-				+0.0
4,661,286	-				+1.0
4,661,294	+				+0.2
4,661,294	+				+1.0
4,661,294	+				-0.6
4,661,294	+				-0.8
4,661,294	+				+0.0
4,661,294	+				-1.3
4,661,294	+				-0.5
4,661,294	+				+1.0
4,661,294	+				+0.0
4,661,294	+				+0.3
4,661,294	+				+0.0
4,661,295	-				+1.0
4,661,295	-				-1.3
4,661,295	-				+0.4
4,661,295	-				-1.7
4,661,295	-				+0.0