Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3862

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,493,944	-		Pf6N2E2_3861	0.64	-1.5
4,493,975	+		Pf6N2E2_3861	0.67	+2.0
4,493,976	-		Pf6N2E2_3861	0.67	+1.0
4,493,990	+		Pf6N2E2_3861	0.69	-0.7
4,494,038	+		Pf6N2E2_3861	0.74	+0.0
4,494,071	+		Pf6N2E2_3861	0.77	+0.2
4,494,071	+		Pf6N2E2_3861	0.77	+0.0
4,494,072	-		Pf6N2E2_3861	0.77	+1.0
4,494,072	-		Pf6N2E2_3861	0.77	+1.0
4,494,072	-		Pf6N2E2_3861	0.77	+0.0
4,494,075	+		Pf6N2E2_3861	0.77	+1.0
4,494,075	+		Pf6N2E2_3861	0.77	+0.6
4,494,076	-		Pf6N2E2_3861	0.78	-0.3
4,494,076	-		Pf6N2E2_3861	0.78	+1.0
4,494,132	-		Pf6N2E2_3861	0.83	+0.0
4,494,132	-		Pf6N2E2_3861	0.83	+0.0
4,494,132	-		Pf6N2E2_3861	0.83	-0.4
4,494,132	-		Pf6N2E2_3861	0.83	-0.5
4,494,132	-		Pf6N2E2_3861	0.83	-1.3
4,494,133	+		Pf6N2E2_3861	0.83	-0.6
4,494,133	+		Pf6N2E2_3861	0.83	-1.0
4,494,133	+		Pf6N2E2_3861	0.83	+1.0
4,494,133	+		Pf6N2E2_3861	0.83	+1.0
4,494,133	+		Pf6N2E2_3861	0.83	+1.0
4,494,133	+		Pf6N2E2_3861	0.83	+0.0
4,494,133	+		Pf6N2E2_3861	0.83	-1.0
4,494,133	+		Pf6N2E2_3861	0.83	+0.3
4,494,134	-		Pf6N2E2_3861	0.83	+0.0
4,494,134	-		Pf6N2E2_3861	0.83	-1.3
4,494,134	-		Pf6N2E2_3861	0.83	+0.0
4,494,134	-		Pf6N2E2_3861	0.83	-0.5
4,494,134	-		Pf6N2E2_3861	0.83	-1.1
4,494,134	-		Pf6N2E2_3861	0.83	-0.5
4,494,141	-		Pf6N2E2_3861	0.84	-0.7
4,494,141	-		Pf6N2E2_3861	0.84	+1.0
4,494,141	-		Pf6N2E2_3861	0.84	+1.0
4,494,157	+		Pf6N2E2_3861	0.86	+1.0
4,494,158	-		Pf6N2E2_3861	0.86	+1.0
4,494,162	-		Pf6N2E2_3861	0.86	-1.8
4,494,162	-		Pf6N2E2_3861	0.86	+1.0
4,494,235	+				+1.0
4,494,236	-				+1.0
4,494,236	-				+1.0
4,494,291	-				+0.0
4,494,291	-				+1.0
4,494,296	-				+0.0
4,494,322	-				-2.4
4,494,322	-				+1.0
4,494,397	-				-1.0
4,494,397	-				-1.0
4,494,527	+				-0.4
4,494,528	-				-0.9
4,494,528	-				-1.3
4,494,528	-				-0.5
4,494,592	+				+1.1
4,494,592	+				-0.3
4,494,593	-				+0.5
4,494,593	-				+0.1
4,494,593	-				+0.3
4,494,618	+				+0.1
4,494,618	+				+1.1
4,494,618	+				+1.1
4,494,618	+				+0.1
4,494,618	+				+1.1
4,494,618	+				+0.1
4,494,619	-				-0.3
4,494,619	-				+0.1
4,494,619	-				+1.1
4,494,619	-				-1.5
4,494,719	+				+0.1
4,494,751	+				+0.1
4,494,751	+				-0.5
4,494,751	+				+1.1
4,494,752	-				+1.1
4,494,752	-				+1.1
4,494,752	-				-0.5
4,494,752	-				+0.1
4,494,792	+				+0.1
4,494,792	+				-0.9
4,494,792	+				+0.1
4,494,793	-				+1.1
4,494,793	-				+1.1
4,494,793	-				-0.5
4,494,794	+				+1.1
4,494,794	+				+1.1
4,494,794	+				-0.6
4,494,794	+				+0.1
4,494,794	+				+1.1
4,494,794	+				+0.1
4,494,795	-				+1.1
4,494,795	-				-0.5
4,494,795	-				+1.1
4,494,795	-				-1.3
4,494,795	-				+1.1
4,494,795	-				+1.1
4,494,795	-				-0.2
4,494,825	+				+0.1
4,494,833	+				+1.1
4,494,833	+				+1.1
4,494,834	-				+0.1
4,494,834	-				+0.1
4,494,867	-				+1.1
4,494,867	-				-1.2
4,494,969	-		Pf6N2E2_3862	0.15	+0.1
4,494,979	-		Pf6N2E2_3862	0.20	-1.3
4,495,028	-		Pf6N2E2_3862	0.43	-1.0
4,495,028	-		Pf6N2E2_3862	0.43	+1.1
4,495,028	-		Pf6N2E2_3862	0.43	-2.1
4,495,043	+		Pf6N2E2_3862	0.50	+0.1
4,495,043	+		Pf6N2E2_3862	0.50	+0.1
4,495,044	-		Pf6N2E2_3862	0.51	-0.5
4,495,085	+		Pf6N2E2_3862	0.70	+1.1
4,495,086	-		Pf6N2E2_3862	0.71	+0.1
4,495,086	-		Pf6N2E2_3862	0.71	+0.1
4,495,086	-		Pf6N2E2_3862	0.71	-1.5
4,495,090	-		Pf6N2E2_3862	0.73	+1.1
4,495,090	-		Pf6N2E2_3862	0.73	+1.1
4,495,172	+				+1.1
4,495,172	+				-0.5
4,495,173	-				+1.1
4,495,173	-				-0.7
4,495,183	+				-2.6
4,495,184	-				+0.1
4,495,184	-				+0.1
4,495,302	-		Pf6N2E2_3863	0.12	+1.1
4,495,304	+		Pf6N2E2_3863	0.12	+0.1
4,495,377	-		Pf6N2E2_3863	0.19	+0.1
4,495,386	-		Pf6N2E2_3863	0.20	-0.2
4,495,386	-		Pf6N2E2_3863	0.20	+1.1
4,495,402	+		Pf6N2E2_3863	0.22	+1.1
4,495,403	-		Pf6N2E2_3863	0.22	-0.8
4,495,403	-		Pf6N2E2_3863	0.22	-0.5
4,495,403	-		Pf6N2E2_3863	0.22	+0.1
4,495,406	-		Pf6N2E2_3863	0.22	+1.1
4,495,406	-		Pf6N2E2_3863	0.22	-0.5
4,495,487	-		Pf6N2E2_3863	0.30	+1.1
4,495,487	-		Pf6N2E2_3863	0.30	-1.1
4,495,487	-		Pf6N2E2_3863	0.30	+0.3
4,495,556	-		Pf6N2E2_3863	0.36	-1.6
4,495,892	-		Pf6N2E2_3863	0.68	-0.5
4,495,982	-		Pf6N2E2_3863	0.76	-0.8
4,496,001	-		Pf6N2E2_3863	0.78	-0.5
4,496,001	-		Pf6N2E2_3863	0.78	+1.1
4,496,034	-		Pf6N2E2_3863	0.81	+1.1