Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3687

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,300,373	+		Pf6N2E2_3686	0.59	-0.1
4,300,373	+		Pf6N2E2_3686	0.59	-0.6
4,300,374	-		Pf6N2E2_3686	0.59	+0.0
4,300,374	-		Pf6N2E2_3686	0.59	+1.0
4,300,581	-		Pf6N2E2_3686	0.71	-1.0
4,300,877	+		Pf6N2E2_3686	0.87	-0.1
4,300,897	+		Pf6N2E2_3686	0.88	+0.3
4,300,898	-		Pf6N2E2_3686	0.88	-0.6
4,300,982	+				+1.0
4,300,982	+				-1.6
4,300,982	+				+1.0
4,300,982	+				+1.0
4,300,982	+				-0.4
4,300,983	-				-0.6
4,300,983	-				+0.0
4,300,983	-				-0.1
4,300,983	-				+0.0
4,300,983	-				-1.0
4,300,983	-				+1.0
4,300,983	-				+0.0
4,300,983	-				-0.7
4,300,983	-				-0.7
4,300,983	-				+1.0
4,300,984	+				-0.6
4,300,985	-				+0.6
4,300,985	-				-0.1
4,301,074	+				-0.3
4,301,074	+				-1.0
4,301,074	+				+1.0
4,301,074	+				+1.0
4,301,074	+				-0.6
4,301,074	+				-0.6
4,301,074	+				+1.0
4,301,074	+				+1.0
4,301,074	+				+1.0
4,301,074	+				-0.2
4,301,075	-				+1.0
4,301,075	-				+1.0
4,301,075	-				+1.0
4,301,571	+		Pf6N2E2_3687	0.83	-1.3
4,301,572	-		Pf6N2E2_3687	0.83	-1.0
4,301,572	-		Pf6N2E2_3687	0.83	+1.0
4,301,850	+				-1.0
4,301,917	-				-0.7
4,301,947	-				+0.0
4,302,036	+				-2.3
4,302,036	+				+1.0
4,302,042	+				+1.0
4,302,043	-				+1.0
4,302,092	+				-1.9
4,302,092	+				-1.3
4,302,092	+				+1.0
4,302,093	-				+1.0
4,302,093	-				+1.0
4,302,093	-				+1.0
4,302,093	-				-0.6
4,302,116	+				+0.6
4,302,116	+				+1.0
4,302,117	-				-0.2
4,302,117	-				+1.0
4,302,120	+				+1.0
4,302,120	+				+1.0
4,302,120	+				-1.3
4,302,120	+				+0.0
4,302,120	+				+1.0
4,302,121	-				-0.1
4,302,121	-				-0.6
4,302,121	-				+1.0
4,302,121	-				+1.0
4,302,123	+				+1.0
4,302,123	+				+1.0
4,302,123	+				+1.0
4,302,123	+				+1.0
4,302,124	-				-1.3
4,302,124	-				-0.6
4,302,124	-				+0.0
4,302,192	-				-0.6
4,302,362	-		Pf6N2E2_3689	0.15	+1.0
4,302,362	-		Pf6N2E2_3689	0.15	+0.0
4,302,413	-		Pf6N2E2_3689	0.18	+1.0
4,302,451	+		Pf6N2E2_3689	0.20	+1.0
4,302,451	+		Pf6N2E2_3689	0.20	-0.4
4,302,522	+		Pf6N2E2_3689	0.25	+1.0