Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3559

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,149,490	-		Pf6N2E2_3558	0.36	+1.0
4,149,490	-		Pf6N2E2_3558	0.36	-0.6
4,149,490	-		Pf6N2E2_3558	0.36	-2.8
4,149,630	+		Pf6N2E2_3558	0.50	+1.0
4,149,630	+		Pf6N2E2_3558	0.50	+1.0
4,149,630	+		Pf6N2E2_3558	0.50	+1.0
4,149,696	-		Pf6N2E2_3558	0.57	+1.0
4,149,781	+		Pf6N2E2_3558	0.66	+1.0
4,149,782	-		Pf6N2E2_3558	0.67	-0.3
4,149,939	+		Pf6N2E2_3558	0.83	-1.0
4,149,940	-		Pf6N2E2_3558	0.83	-0.6
4,150,002	+				-0.8
4,150,002	+				-0.6
4,150,003	-				+0.7
4,150,077	+				+1.0
4,150,077	+				-1.0
4,150,077	+				-0.0
4,150,078	-				+1.0
4,150,078	-				+1.0
4,150,078	-				-0.0
4,150,078	-				-0.0
4,150,080	+				-1.8
4,150,081	-				-0.0
4,150,081	-				-0.0
4,150,081	-				+0.6
4,150,152	+				-0.0
4,150,153	-				+1.0
4,150,153	-				-0.6
4,150,153	-				+1.0
4,150,153	-				-1.3
4,150,315	+				-1.6
4,150,316	-				+1.0
4,150,354	+				+0.3
4,150,354	+				-1.0
4,150,354	+				-0.6
4,150,354	+				+1.0
4,150,354	+				+1.0
4,150,355	-				-0.6
4,150,355	-				-0.0
4,150,355	-				+1.0
4,150,355	-				+1.0
4,150,355	-				-0.1
4,150,355	-				+1.0
4,150,355	-				+1.0
4,150,559	+		Pf6N2E2_3559	0.13	-0.6
4,150,595	+		Pf6N2E2_3559	0.16	-1.3
4,150,907	+		Pf6N2E2_3559	0.40	+1.0
4,150,907	+		Pf6N2E2_3559	0.40	+1.0
4,150,907	+		Pf6N2E2_3559	0.40	-0.6
4,151,141	+		Pf6N2E2_3559	0.59	-0.0
4,151,141	+		Pf6N2E2_3559	0.59	+1.0
4,151,141	+		Pf6N2E2_3559	0.59	-1.7
4,151,141	+		Pf6N2E2_3559	0.59	+1.0
4,151,142	-		Pf6N2E2_3559	0.59	-1.6
4,151,142	-		Pf6N2E2_3559	0.59	-1.0
4,151,142	-		Pf6N2E2_3559	0.59	-0.0
4,151,198	+		Pf6N2E2_3559	0.63	-0.6
4,151,198	+		Pf6N2E2_3559	0.63	-0.0
4,151,199	-		Pf6N2E2_3559	0.63	-0.0
4,151,199	-		Pf6N2E2_3559	0.63	+1.0
4,151,602	+				-0.0
4,151,602	+				+1.0
4,151,602	+				-0.0
4,151,602	+				+1.0
4,151,603	-				+1.0
4,151,793	+				+1.0
4,151,839	+				+1.0
4,151,839	+				+1.0
4,151,839	+				+1.0
4,151,839	+				-0.0
4,151,840	-				-0.0
4,151,840	-				+1.0
4,151,840	-				+1.0
4,151,840	-				+1.0
4,151,840	-				-0.3
4,151,845	+				+1.0
4,151,845	+				+1.0
4,151,845	+				-0.6
4,151,846	-				-0.0
4,151,849	-				-0.7
4,151,849	-				-0.0
4,151,849	-				-0.0
4,151,849	-				-0.0
4,151,849	-				-0.6
4,151,849	-				+1.0
4,151,968	+		Pf6N2E2_3560	0.16	-0.0
4,151,968	+		Pf6N2E2_3560	0.16	+1.0
4,151,968	+		Pf6N2E2_3560	0.16	-0.5
4,151,968	+		Pf6N2E2_3560	0.16	-1.0
4,151,969	-		Pf6N2E2_3560	0.16	-0.6
4,151,969	-		Pf6N2E2_3560	0.16	-0.6
4,151,995	+		Pf6N2E2_3560	0.19	-0.3
4,152,133	-		Pf6N2E2_3560	0.33	-0.0
4,152,460	+		Pf6N2E2_3560	0.65	+1.0
4,152,460	+		Pf6N2E2_3560	0.65	+1.0
4,152,460	+		Pf6N2E2_3560	0.65	+2.0
4,152,461	-		Pf6N2E2_3560	0.65	+1.0
4,152,461	-		Pf6N2E2_3560	0.65	-0.0