Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3403

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
3,946,674	-		Pf6N2E2_3402	0.26	-1.8
3,946,674	-		Pf6N2E2_3402	0.26	+1.0
3,946,733	+		Pf6N2E2_3402	0.31	+1.0
3,946,733	+		Pf6N2E2_3402	0.31	+0.7
3,946,733	+		Pf6N2E2_3402	0.31	-0.7
3,946,734	-		Pf6N2E2_3402	0.31	+1.0
3,946,734	-		Pf6N2E2_3402	0.31	+1.0
3,946,734	-		Pf6N2E2_3402	0.31	-0.3
3,946,734	-		Pf6N2E2_3402	0.31	-1.0
3,946,742	-		Pf6N2E2_3402	0.32	+1.0
3,946,785	+		Pf6N2E2_3402	0.35	-0.6
3,946,786	-		Pf6N2E2_3402	0.35	+1.0
3,946,786	-		Pf6N2E2_3402	0.35	-0.6
3,946,786	-		Pf6N2E2_3402	0.35	+1.0
3,946,802	-		Pf6N2E2_3402	0.36	-0.0
3,947,036	+		Pf6N2E2_3402	0.55	-1.0
3,947,036	+		Pf6N2E2_3402	0.55	+1.0
3,947,037	-		Pf6N2E2_3402	0.55	-0.6
3,947,037	-		Pf6N2E2_3402	0.55	+1.0
3,947,037	-		Pf6N2E2_3402	0.55	+1.0
3,947,037	-		Pf6N2E2_3402	0.55	+1.0
3,947,037	-		Pf6N2E2_3402	0.55	-0.0
3,947,039	-		Pf6N2E2_3402	0.56	-0.3
3,947,294	+		Pf6N2E2_3402	0.76	-0.0
3,947,295	-		Pf6N2E2_3402	0.76	+1.0
3,947,295	-		Pf6N2E2_3402	0.76	-0.0
3,947,434	+		Pf6N2E2_3402	0.88	-0.6
3,947,434	+		Pf6N2E2_3402	0.88	-0.7
3,947,434	+		Pf6N2E2_3402	0.88	-0.0
3,947,434	+		Pf6N2E2_3402	0.88	-0.6
3,947,434	+		Pf6N2E2_3402	0.88	+1.0
3,947,435	-		Pf6N2E2_3402	0.88	-0.3
3,947,435	-		Pf6N2E2_3402	0.88	+1.0
3,947,435	-		Pf6N2E2_3402	0.88	-0.0
3,947,435	-		Pf6N2E2_3402	0.88	-0.0
3,947,435	-		Pf6N2E2_3402	0.88	-2.3
3,947,435	-		Pf6N2E2_3402	0.88	+1.0
3,947,441	-		Pf6N2E2_3402	0.88	-0.8
3,947,441	-		Pf6N2E2_3402	0.88	+1.0
3,947,441	-		Pf6N2E2_3402	0.88	-0.0
3,947,513	+				-0.1
3,947,514	-				-0.0
3,947,514	-				+1.0
3,947,530	-				+1.0
3,947,656	-				+1.0
3,947,656	-				-0.8
3,947,814	+		Pf6N2E2_3403	0.16	-0.2
3,947,814	+		Pf6N2E2_3403	0.16	-1.6
3,947,815	-		Pf6N2E2_3403	0.16	-0.0
3,947,815	-		Pf6N2E2_3403	0.16	-0.0
3,947,815	-		Pf6N2E2_3403	0.16	+1.0
3,947,940	+		Pf6N2E2_3403	0.25	-0.6
3,947,940	+		Pf6N2E2_3403	0.25	-0.3
3,947,940	+		Pf6N2E2_3403	0.25	+1.0
3,947,940	+		Pf6N2E2_3403	0.25	-0.7
3,947,940	+		Pf6N2E2_3403	0.25	+1.0
3,947,940	+		Pf6N2E2_3403	0.25	+1.0
3,947,941	-		Pf6N2E2_3403	0.25	-1.5
3,947,941	-		Pf6N2E2_3403	0.25	-0.0
3,947,941	-		Pf6N2E2_3403	0.25	-0.6
3,948,002	+		Pf6N2E2_3403	0.29	-0.6
3,948,002	+		Pf6N2E2_3403	0.29	-0.0
3,948,003	-		Pf6N2E2_3403	0.29	-0.3
3,948,003	-		Pf6N2E2_3403	0.29	-0.0
3,948,003	-		Pf6N2E2_3403	0.29	-1.6
3,948,039	+		Pf6N2E2_3403	0.32	-0.6
3,948,040	-		Pf6N2E2_3403	0.32	-0.0
3,948,056	-		Pf6N2E2_3403	0.33	-0.0
3,948,056	-		Pf6N2E2_3403	0.33	-0.5
3,948,156	+		Pf6N2E2_3403	0.40	-0.6
3,948,156	+		Pf6N2E2_3403	0.40	-0.6
3,948,157	-		Pf6N2E2_3403	0.40	-1.3
3,948,157	-		Pf6N2E2_3403	0.40	-0.6
3,948,157	-		Pf6N2E2_3403	0.40	-0.7
3,948,157	-		Pf6N2E2_3403	0.40	-0.0
3,948,157	-		Pf6N2E2_3403	0.40	-0.6
3,948,168	-		Pf6N2E2_3403	0.41	-0.6
3,948,168	-		Pf6N2E2_3403	0.41	-0.3
3,948,215	-		Pf6N2E2_3403	0.44	-0.7
3,948,215	-		Pf6N2E2_3403	0.44	-0.0
3,948,347	-		Pf6N2E2_3403	0.53	-1.0
3,948,554	+		Pf6N2E2_3403	0.68	+0.4
3,948,554	+		Pf6N2E2_3403	0.68	-0.6
3,948,554	+		Pf6N2E2_3403	0.68	-0.0
3,948,554	+		Pf6N2E2_3403	0.68	-1.0
3,948,554	+		Pf6N2E2_3403	0.68	-0.6
3,948,554	+		Pf6N2E2_3403	0.68	+1.0
3,948,554	+		Pf6N2E2_3403	0.68	+1.0
3,948,555	-		Pf6N2E2_3403	0.68	-0.4
3,948,555	-		Pf6N2E2_3403	0.68	+1.0
3,948,555	-		Pf6N2E2_3403	0.68	-0.0
3,948,555	-		Pf6N2E2_3403	0.68	+1.0
3,948,873	+				+1.0
3,948,873	+				+1.0
3,948,873	+				-0.0
3,948,873	+				-0.6
3,948,873	+				+1.0
3,948,874	-				+1.0
3,948,874	-				+1.0
3,948,979	+				-0.6
3,948,979	+				-0.8
3,948,980	-				-0.0
3,948,980	-				+1.0
3,949,102	+		Pf6N2E2_3404	0.12	-0.2
3,949,103	-		Pf6N2E2_3404	0.13	+0.7
3,949,103	-		Pf6N2E2_3404	0.13	-0.6
3,949,103	-		Pf6N2E2_3404	0.13	+1.0
3,949,103	-		Pf6N2E2_3404	0.13	+1.0
3,949,103	-		Pf6N2E2_3404	0.13	-0.0
3,949,127	+		Pf6N2E2_3404	0.16	+1.0
3,949,127	+		Pf6N2E2_3404	0.16	+1.0
3,949,127	+		Pf6N2E2_3404	0.16	+0.1
3,949,128	-		Pf6N2E2_3404	0.16	-1.5
3,949,128	-		Pf6N2E2_3404	0.16	+1.0
3,949,231	+		Pf6N2E2_3404	0.31	+0.3
3,949,231	+		Pf6N2E2_3404	0.31	+1.0
3,949,231	+		Pf6N2E2_3404	0.31	-0.0
3,949,231	+		Pf6N2E2_3404	0.31	+1.0
3,949,232	-		Pf6N2E2_3404	0.31	+1.0
3,949,232	-		Pf6N2E2_3404	0.31	-1.0
3,949,232	-		Pf6N2E2_3404	0.31	-0.0
3,949,232	-		Pf6N2E2_3404	0.31	-0.0
3,949,384	+		Pf6N2E2_3404	0.54	+1.0
3,949,384	+		Pf6N2E2_3404	0.54	+1.0
3,949,384	+		Pf6N2E2_3404	0.54	+1.0
3,949,385	-		Pf6N2E2_3404	0.54	-0.0
3,949,385	-		Pf6N2E2_3404	0.54	-2.5
3,949,669	+				-0.6
3,949,767	+		Pf6N2E2_3405	0.11	-0.5
3,949,767	+		Pf6N2E2_3405	0.11	+1.0
3,949,767	+		Pf6N2E2_3405	0.11	+0.0
3,949,767	+		Pf6N2E2_3405	0.11	+0.0
3,949,768	-		Pf6N2E2_3405	0.11	+0.0
3,949,768	-		Pf6N2E2_3405	0.11	-0.8
3,949,768	-		Pf6N2E2_3405	0.11	+0.0
3,949,768	-		Pf6N2E2_3405	0.11	+1.0
3,949,768	-		Pf6N2E2_3405	0.11	-1.3
3,949,788	+		Pf6N2E2_3405	0.14	-1.0
3,949,788	+		Pf6N2E2_3405	0.14	+0.2
3,949,788	+		Pf6N2E2_3405	0.14	-0.6
3,949,788	+		Pf6N2E2_3405	0.14	-1.7
3,949,788	+		Pf6N2E2_3405	0.14	-0.6
3,949,789	-		Pf6N2E2_3405	0.14	+0.0
3,949,789	-		Pf6N2E2_3405	0.14	-1.0
3,949,789	-		Pf6N2E2_3405	0.14	+1.0
3,949,899	+		Pf6N2E2_3405	0.31	+1.0
3,949,899	+		Pf6N2E2_3405	0.31	-0.6
3,949,899	+		Pf6N2E2_3405	0.31	+1.0
3,949,899	+		Pf6N2E2_3405	0.31	+1.0
3,949,899	+		Pf6N2E2_3405	0.31	+1.0
3,949,900	-		Pf6N2E2_3405	0.31	+0.3
3,949,900	-		Pf6N2E2_3405	0.31	-0.9
3,949,900	-		Pf6N2E2_3405	0.31	-1.0
3,949,900	-		Pf6N2E2_3405	0.31	+0.0
3,949,950	+		Pf6N2E2_3405	0.39	+0.0
3,949,950	+		Pf6N2E2_3405	0.39	-0.6
3,949,950	+		Pf6N2E2_3405	0.39	-0.9
3,949,951	-		Pf6N2E2_3405	0.39	+0.0
3,949,966	+		Pf6N2E2_3405	0.41	-0.6
3,949,966	+		Pf6N2E2_3405	0.41	+0.0