Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2965

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
3,456,699	+		Pf6N2E2_2963	0.90	+1.0
3,456,797	+				+1.0
3,456,797	+				+1.0
3,456,798	-				+1.0
3,456,798	-				+1.0
3,456,971	+				+1.4
3,457,026	-		Pf6N2E2_2964	0.10	+1.0
3,457,026	-		Pf6N2E2_2964	0.10	+0.3
3,457,086	-		Pf6N2E2_2964	0.19	+0.4
3,457,442	+		Pf6N2E2_2964	0.74	+1.0
3,457,443	-		Pf6N2E2_2964	0.74	+1.0
3,457,600	-				+0.0
3,457,600	-				+1.0
3,457,690	+		Pf6N2E2_2965	0.18	+1.0
3,457,690	+		Pf6N2E2_2965	0.18	+1.0
3,457,690	+		Pf6N2E2_2965	0.18	-1.1
3,457,690	+		Pf6N2E2_2965	0.18	-0.6
3,457,691	-		Pf6N2E2_2965	0.19	-0.6
3,457,691	-		Pf6N2E2_2965	0.19	+0.0
3,457,858	+				+0.0
3,457,859	-				+1.0
3,457,859	-				+0.0
3,457,859	-				-0.5
3,457,919	+				+1.0
3,457,919	+				+0.0
3,457,919	+				+1.0
3,457,919	+				+1.0
3,457,919	+				+0.0
3,457,920	-				+1.0
3,457,920	-				+0.0
3,457,920	-				-0.6
3,457,920	-				+0.0
3,457,920	-				+1.0
3,457,920	-				+0.0
3,457,920	-				+1.0
3,458,575	-				+1.0
3,458,575	-				+0.0
3,458,678	-				+0.9
3,458,725	-				+0.3
3,458,772	+				+1.0
3,458,772	+				+1.0
3,458,772	+				-0.6
3,458,772	+				-0.8
3,458,772	+				-0.3
3,458,773	-				+1.0
3,458,773	-				+1.0
3,458,773	-				+1.0
3,458,797	+				-1.5
3,458,858	+				-0.3
3,458,858	+				-1.0