Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_277 and Pf6N2E2_278 are separated by 871 nucleotides Pf6N2E2_278 and Pf6N2E2_279 are separated by 107 nucleotides
Pf6N2E2_277 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 342,559 to 342,972
_277
Pf6N2E2_278 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 343,844 to 345,766
_278
Pf6N2E2_279 - Isocitrate lyase (EC 4.1.3.1), at 345,874 to 347,199
_279
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -2
-1
0
1 at 343.016 kb on - strand at 343.036 kb on - strand at 343.106 kb on - strand at 343.118 kb on - strand at 343.125 kb on + strand at 343.126 kb on - strand at 343.189 kb on - strand at 343.189 kb on - strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.270 kb on - strand at 343.270 kb on - strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.332 kb on + strand at 343.354 kb on + strand at 343.549 kb on + strand at 343.550 kb on - strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.557 kb on - strand at 343.557 kb on - strand at 343.634 kb on + strand at 343.634 kb on + strand at 343.635 kb on - strand at 343.701 kb on - strand at 343.701 kb on - strand at 343.752 kb on - strand at 343.752 kb on - strand at 343.759 kb on + strand at 343.759 kb on + strand at 343.775 kb on - strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.796 kb on + strand at 343.796 kb on + strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.829 kb on + strand at 343.830 kb on - strand at 343.991 kb on - strand at 344.039 kb on + strand, within Pf6N2E2_278 at 344.206 kb on + strand, within Pf6N2E2_278 at 344.206 kb on + strand, within Pf6N2E2_278 at 344.307 kb on + strand, within Pf6N2E2_278 at 344.308 kb on - strand, within Pf6N2E2_278 at 344.308 kb on - strand, within Pf6N2E2_278 at 344.349 kb on - strand, within Pf6N2E2_278 at 344.393 kb on + strand, within Pf6N2E2_278 at 344.510 kb on + strand, within Pf6N2E2_278 at 344.511 kb on - strand, within Pf6N2E2_278 at 344.585 kb on - strand, within Pf6N2E2_278 at 344.585 kb on - strand, within Pf6N2E2_278 at 344.660 kb on + strand, within Pf6N2E2_278 at 344.848 kb on + strand, within Pf6N2E2_278 at 344.848 kb on + strand, within Pf6N2E2_278 at 344.893 kb on + strand, within Pf6N2E2_278 at 344.894 kb on - strand, within Pf6N2E2_278 at 345.469 kb on + strand, within Pf6N2E2_278 at 345.661 kb on - strand at 345.661 kb on - strand at 346.001 kb on + strand at 346.002 kb on - strand at 346.071 kb on - strand, within Pf6N2E2_279 at 346.142 kb on + strand, within Pf6N2E2_279 at 346.143 kb on - strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.230 kb on - strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.480 kb on - strand, within Pf6N2E2_279 at 346.670 kb on + strand, within Pf6N2E2_279 at 346.728 kb on - strand, within Pf6N2E2_279 at 346.736 kb on + strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 343,016 - +0.9 343,036 - -0.1 343,106 - -0.1 343,118 - +0.9 343,125 + +0.9 343,126 - -0.1 343,189 - +0.9 343,189 - +0.9 343,269 + -1.1 343,269 + +0.9 343,269 + -0.1 343,269 + -0.6 343,270 - -0.1 343,270 - +0.9 343,294 + +0.9 343,294 + +1.5 343,294 + +0.9 343,294 + +0.9 343,332 + +0.1 343,354 + +0.9 343,549 + -0.1 343,550 - -0.6 343,556 + -0.1 343,556 + -1.5 343,556 + +0.9 343,556 + -0.1 343,556 + -0.1 343,557 - +0.9 343,557 - +0.9 343,634 + -0.5 343,634 + -1.1 343,635 - +0.9 343,701 - +0.9 343,701 - +0.9 343,752 - -0.1 343,752 - -0.5 343,759 + +0.9 343,759 + -1.2 343,775 - -0.3 343,792 + +0.9 343,792 + -0.8 343,792 + +0.9 343,792 + +0.9 343,792 + -0.6 343,793 - +0.9 343,793 - +0.9 343,793 - -0.8 343,793 - +0.9 343,793 - -0.1 343,793 - -0.6 343,793 - -0.2 343,793 - -0.7 343,793 - +0.5 343,793 - +0.9 343,793 - +0.9 343,796 + -1.1 343,796 + +0.9 343,797 - -0.1 343,797 - -0.1 343,797 - -0.1 343,797 - -1.5 343,797 - -0.3 343,829 + -0.8 343,830 - -0.1 343,991 - +0.9 344,039 + Pf6N2E2_278 0.10 -0.1 344,206 + Pf6N2E2_278 0.19 -0.1 344,206 + Pf6N2E2_278 0.19 -0.1 344,307 + Pf6N2E2_278 0.24 -0.6 344,308 - Pf6N2E2_278 0.24 +0.9 344,308 - Pf6N2E2_278 0.24 +0.9 344,349 - Pf6N2E2_278 0.26 -0.6 344,393 + Pf6N2E2_278 0.29 +0.9 344,510 + Pf6N2E2_278 0.35 -0.1 344,511 - Pf6N2E2_278 0.35 -0.1 344,585 - Pf6N2E2_278 0.39 +0.9 344,585 - Pf6N2E2_278 0.39 -0.1 344,660 + Pf6N2E2_278 0.42 -1.4 344,848 + Pf6N2E2_278 0.52 -0.1 344,848 + Pf6N2E2_278 0.52 +0.9 344,893 + Pf6N2E2_278 0.55 -0.6 344,894 - Pf6N2E2_278 0.55 -1.4 345,469 + Pf6N2E2_278 0.85 -1.9 345,661 - -0.1 345,661 - +0.9 346,001 + +0.9 346,002 - +0.3 346,071 - Pf6N2E2_279 0.15 -0.1 346,142 + Pf6N2E2_279 0.20 +0.3 346,143 - Pf6N2E2_279 0.20 -0.9 346,229 + Pf6N2E2_279 0.27 -0.1 346,229 + Pf6N2E2_279 0.27 +0.9 346,229 + Pf6N2E2_279 0.27 +0.9 346,230 - Pf6N2E2_279 0.27 +0.9 346,388 + Pf6N2E2_279 0.39 -0.5 346,388 + Pf6N2E2_279 0.39 -0.1 346,388 + Pf6N2E2_279 0.39 -0.1 346,388 + Pf6N2E2_279 0.39 +0.9 346,388 + Pf6N2E2_279 0.39 -1.3 346,388 + Pf6N2E2_279 0.39 +0.9 346,389 - Pf6N2E2_279 0.39 -0.1 346,389 - Pf6N2E2_279 0.39 -0.5 346,389 - Pf6N2E2_279 0.39 -0.1 346,480 - Pf6N2E2_279 0.46 +0.9 346,670 + Pf6N2E2_279 0.60 +0.9 346,728 - Pf6N2E2_279 0.64 +0.9 346,736 + Pf6N2E2_279 0.65 +0.9 346,737 - Pf6N2E2_279 0.65 +0.9 346,737 - Pf6N2E2_279 0.65 +0.9 346,737 - Pf6N2E2_279 0.65 +0.4
Or see this region's nucleotide sequence