Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1320

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,553,519	+				-1.2
1,553,519	+				-0.2
1,553,519	+				+0.8
1,553,519	+				+0.8
1,553,519	+				+0.8
1,553,520	-				+0.8
1,553,520	-				-0.2
1,553,520	-				+0.6
1,553,520	-				-0.7
1,553,520	-				+0.8
1,553,520	-				-0.5
1,553,839	-		Pf6N2E2_1319	0.42	+0.8
1,553,874	+		Pf6N2E2_1319	0.52	-0.2
1,553,874	+		Pf6N2E2_1319	0.52	+0.8
1,553,874	+		Pf6N2E2_1319	0.52	-0.7
1,553,952	+		Pf6N2E2_1319	0.73	+0.8
1,554,033	+				+0.8
1,554,033	+				+0.8
1,554,153	-				-0.2
1,554,187	-		Pf6N2E2_1320	0.13	+0.8
1,554,187	-		Pf6N2E2_1320	0.13	+0.8
1,554,258	+		Pf6N2E2_1320	0.24	+0.8
1,554,258	+		Pf6N2E2_1320	0.24	-0.2
1,554,271	-		Pf6N2E2_1320	0.26	+2.3
1,554,379	-		Pf6N2E2_1320	0.42	+0.8
1,554,716	-				-0.2
1,554,779	-				-0.2
1,554,838	+				+0.8
1,554,839	-				-0.8
1,554,839	-				+0.8
1,555,073	-		Pf6N2E2_1321	0.28	-0.7
1,555,073	-		Pf6N2E2_1321	0.28	-0.7
1,555,075	-		Pf6N2E2_1321	0.29	+0.8
1,555,075	-		Pf6N2E2_1321	0.29	+0.8
1,555,366	-		Pf6N2E2_1321	0.64	-1.0
1,555,378	-		Pf6N2E2_1321	0.65	+0.8
1,555,459	-		Pf6N2E2_1321	0.75	-0.2
1,555,459	-		Pf6N2E2_1321	0.75	-0.2
1,555,480	-		Pf6N2E2_1321	0.78	-0.2
1,555,480	-		Pf6N2E2_1321	0.78	-0.4
1,555,630	+				+0.8
1,555,648	-				-1.5
1,555,669	-				+0.8
1,555,723	+				+0.8