Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5920

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
6,738,091	-				-2.0
6,738,098	+				-0.5
6,738,098	+				-0.4
6,738,098	+				-1.0
6,738,098	+				+1.0
6,738,098	+				+1.0
6,738,099	-				+1.0
6,738,099	-				+1.0
6,738,276	-		Pf6N2E2_5919	0.23	-1.3
6,738,384	-		Pf6N2E2_5919	0.37	-0.2
6,738,449	+		Pf6N2E2_5919	0.45	+1.0
6,738,653	+		Pf6N2E2_5919	0.72	+0.8
6,738,654	-		Pf6N2E2_5919	0.72	+1.0
6,738,815	+				+1.0
6,738,816	-				-0.8
6,738,916	+				-1.6
6,738,916	+				-0.5
6,738,916	+				+0.2
6,738,916	+				-0.5
6,738,916	+				-0.3
6,738,917	-				+1.0
6,738,917	-				+0.0
6,738,920	+				-0.2
6,738,920	+				-0.8
6,738,920	+				-1.0
6,738,920	+				+0.0
6,738,920	+				+0.0
6,738,920	+				-1.0
6,738,920	+				-1.8
6,738,920	+				-0.4
6,738,920	+				+1.0
6,738,921	-				+0.0
6,738,921	-				+1.0
6,738,921	-				+1.0
6,738,921	-				+1.0
6,738,921	-				-0.6
6,738,921	-				+1.0
6,738,921	-				+0.0
6,738,921	-				+1.0
6,738,921	-				-1.0
6,738,921	-				+0.5
6,738,940	+				-1.6
6,738,941	-				+1.0
6,739,343	-		Pf6N2E2_5920	0.39	+0.0
6,739,457	+		Pf6N2E2_5920	0.48	-1.0
6,739,459	+		Pf6N2E2_5920	0.48	+1.0
6,739,505	+		Pf6N2E2_5920	0.52	-1.0
6,739,506	-		Pf6N2E2_5920	0.52	+1.0
6,739,722	+		Pf6N2E2_5920	0.70	-1.2
6,739,723	-		Pf6N2E2_5920	0.70	-0.6
6,739,789	-		Pf6N2E2_5920	0.75	-1.0
6,740,064	+				+1.0
6,740,064	+				+1.0
6,740,078	+				+1.0
6,740,078	+				+0.0
6,740,078	+				+0.0
6,740,079	-				-1.4
6,740,079	-				+1.0
6,740,079	-				-0.6
6,740,120	+				-0.7
6,740,121	-				+1.0
6,740,130	+				-0.3
6,740,130	+				+0.4
6,740,131	-				+1.0
6,740,131	-				+0.0
6,740,131	-				+0.0
6,740,148	+				+1.0
6,740,148	+				-1.0
6,740,148	+				+1.0
6,740,148	+				+0.0
6,740,148	+				+1.0
6,740,149	-				-0.1
6,740,149	-				-1.3
6,740,381	+				+1.0
6,740,382	-				+0.0
6,740,426	+				-0.7
6,740,582	+				+1.0
6,740,583	-				-0.4
6,740,583	-				-0.5
6,740,596	+				-0.3
6,740,596	+				+0.0
6,740,597	-				-0.6
6,740,597	-				+0.0
6,740,597	-				-0.2
6,740,679	-		Pf6N2E2_5921	0.18	-1.0
6,740,825	-		Pf6N2E2_5921	0.41	-1.2
6,740,825	-		Pf6N2E2_5921	0.41	+0.0
6,740,990	+		Pf6N2E2_5921	0.67	+1.0
6,740,990	+		Pf6N2E2_5921	0.67	-0.6
6,740,990	+		Pf6N2E2_5921	0.67	+1.0
6,740,991	-		Pf6N2E2_5921	0.67	+1.0
6,740,991	-		Pf6N2E2_5921	0.67	-1.3
6,741,025	+		Pf6N2E2_5921	0.73	+0.0
6,741,025	+		Pf6N2E2_5921	0.73	+1.0
6,741,025	+		Pf6N2E2_5921	0.73	-0.6