Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5458

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
6,266,744	-		Pf6N2E2_5457	0.84	+2.6
6,266,812	+		Pf6N2E2_5457	0.87	-0.0
6,266,839	+		Pf6N2E2_5457	0.87	-0.0
6,266,839	+		Pf6N2E2_5457	0.87	+1.0
6,266,840	-		Pf6N2E2_5457	0.88	+1.0
6,266,840	-		Pf6N2E2_5457	0.88	-0.8
6,266,840	-		Pf6N2E2_5457	0.88	+0.2
6,266,884	+		Pf6N2E2_5457	0.89	-0.3
6,266,884	+		Pf6N2E2_5457	0.89	-0.6
6,266,884	+		Pf6N2E2_5457	0.89	-1.0
6,266,885	-		Pf6N2E2_5457	0.89	-0.0
6,266,885	-		Pf6N2E2_5457	0.89	+1.0
6,266,885	-		Pf6N2E2_5457	0.89	-0.0
6,266,930	-				-0.0
6,266,965	+				+1.0
6,266,965	+				-1.1
6,266,966	-				+1.0
6,267,001	+				-0.1
6,267,001	+				-0.3
6,267,001	+				+1.0
6,267,002	-				+1.0
6,267,002	-				+1.0
6,267,002	-				+1.0
6,267,019	+				-0.0
6,267,019	+				+1.0
6,267,019	+				+1.0
6,267,019	+				-0.6
6,267,020	-				+1.0
6,267,156	+				-0.4
6,267,156	+				-0.0
6,267,173	+				-0.0
6,267,228	-				+1.0
6,267,274	+				-0.0
6,267,274	+				-1.0
6,267,275	-				-0.6
6,267,554	+				-0.0
6,267,555	-				+2.0
6,267,579	-		Pf6N2E2_5458	0.11	+1.0
6,267,579	-		Pf6N2E2_5458	0.11	-0.0
6,267,579	-		Pf6N2E2_5458	0.11	-0.0
6,267,579	-		Pf6N2E2_5458	0.11	-1.8
6,267,579	-		Pf6N2E2_5458	0.11	+1.0
6,267,579	-		Pf6N2E2_5458	0.11	-0.2
6,267,579	-		Pf6N2E2_5458	0.11	-1.4
6,267,602	+		Pf6N2E2_5458	0.17	-0.0
6,267,619	+		Pf6N2E2_5458	0.22	-0.8
6,267,619	+		Pf6N2E2_5458	0.22	+1.0
6,267,620	-		Pf6N2E2_5458	0.22	-0.6
6,267,620	-		Pf6N2E2_5458	0.22	-1.0
6,267,719	+		Pf6N2E2_5458	0.49	+1.0
6,267,719	+		Pf6N2E2_5458	0.49	-0.0
6,267,720	-		Pf6N2E2_5458	0.49	-0.8
6,267,720	-		Pf6N2E2_5458	0.49	-0.0
6,267,720	-		Pf6N2E2_5458	0.49	-0.0
6,267,870	+				+1.0
6,267,899	+				+1.0
6,267,934	+				-0.6
6,267,934	+				-1.3
6,268,033	+				-0.0
6,268,033	+				-0.0
6,268,034	-				+1.0
6,268,034	-				-1.0
6,268,034	-				+1.0
6,268,034	-				-1.0
6,268,034	-				-1.3
6,268,034	-				+1.0
6,268,034	-				-0.0
6,268,097	+				+1.0
6,268,097	+				+1.0
6,268,097	+				+1.0
6,268,097	+				-0.0
6,268,097	+				-2.0
6,268,097	+				-1.0
6,268,097	+				+1.0
6,268,097	+				+1.0
6,268,097	+				+1.0
6,268,097	+				-0.0
6,268,097	+				-1.0
6,268,097	+				-1.0
6,268,097	+				+0.4
6,268,097	+				+1.0
6,268,097	+				+1.0
6,268,098	-				-0.4
6,268,098	-				+1.0
6,268,098	-				+1.0
6,268,098	-				+1.0
6,268,098	-				-0.0
6,268,098	-				+1.0
6,268,098	-				+1.0
6,268,100	+				-2.7
6,268,101	-				-0.0
6,268,252	+				+1.0
6,268,264	+				-1.6
6,268,314	+				+1.0
6,268,315	-				-0.0
6,268,438	+				-0.0
6,268,438	+				-0.0
6,268,438	+				-0.0
6,268,439	-				+1.0
6,268,439	-				+2.0
6,268,439	-				+1.0
6,268,439	-				+1.0
6,268,439	-				-1.0
6,268,439	-				-0.6
6,268,439	-				+1.0
6,268,440	+				+0.2
6,268,441	-				-0.0
6,268,441	-				-1.3
6,268,580	+				+1.0
6,268,580	+				+1.0
6,268,581	-				-0.0
6,268,581	-				-0.0
6,268,581	-				-0.6
6,268,581	-				-0.0
6,268,581	-				+1.0
6,268,581	-				-1.3
6,268,761	+		Pf6N2E2_5459	0.12	-0.0
6,268,761	+		Pf6N2E2_5459	0.12	+1.0
6,268,761	+		Pf6N2E2_5459	0.12	-0.6
6,268,761	+		Pf6N2E2_5459	0.12	-0.0
6,268,761	+		Pf6N2E2_5459	0.12	-0.1
6,268,761	+		Pf6N2E2_5459	0.12	+1.0
6,268,762	-		Pf6N2E2_5459	0.12	-0.0
6,268,762	-		Pf6N2E2_5459	0.12	-0.0
6,268,762	-		Pf6N2E2_5459	0.12	+1.0
6,268,851	+		Pf6N2E2_5459	0.19	-0.6
6,268,863	+		Pf6N2E2_5459	0.19	+1.0
6,268,863	+		Pf6N2E2_5459	0.19	-0.0
6,268,864	-		Pf6N2E2_5459	0.19	-0.0
6,268,902	+		Pf6N2E2_5459	0.22	-0.0
6,268,902	+		Pf6N2E2_5459	0.22	-1.0
6,268,903	-		Pf6N2E2_5459	0.22	-0.6
6,268,903	-		Pf6N2E2_5459	0.22	-1.6