Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4949

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
5,703,985	+		Pf6N2E2_4948	0.31	-0.4
5,703,985	+		Pf6N2E2_4948	0.31	+0.1
5,703,985	+		Pf6N2E2_4948	0.31	-0.5
5,703,986	-		Pf6N2E2_4948	0.31	+0.1
5,703,986	-		Pf6N2E2_4948	0.31	+1.1
5,704,006	+		Pf6N2E2_4948	0.32	+0.1
5,704,007	-		Pf6N2E2_4948	0.32	+1.1
5,704,007	-		Pf6N2E2_4948	0.32	+0.5
5,704,007	-		Pf6N2E2_4948	0.32	-0.9
5,704,007	-		Pf6N2E2_4948	0.32	+0.1
5,704,148	-		Pf6N2E2_4948	0.45	+1.1
5,704,148	-		Pf6N2E2_4948	0.45	-0.3
5,704,195	+		Pf6N2E2_4948	0.49	+0.1
5,704,195	+		Pf6N2E2_4948	0.49	+0.1
5,704,195	+		Pf6N2E2_4948	0.49	+0.1
5,704,195	+		Pf6N2E2_4948	0.49	-0.8
5,704,196	-		Pf6N2E2_4948	0.49	-0.7
5,704,196	-		Pf6N2E2_4948	0.49	-0.9
5,704,380	+		Pf6N2E2_4948	0.65	+0.7
5,704,381	-		Pf6N2E2_4948	0.65	+0.1
5,704,592	+		Pf6N2E2_4948	0.83	-0.5
5,704,592	+		Pf6N2E2_4948	0.83	-0.0
5,704,592	+		Pf6N2E2_4948	0.83	-0.9
5,704,592	+		Pf6N2E2_4948	0.83	-0.5
5,704,592	+		Pf6N2E2_4948	0.83	+1.1
5,704,593	-		Pf6N2E2_4948	0.83	-0.6
5,704,610	-		Pf6N2E2_4948	0.85	-0.5
5,704,669	+		Pf6N2E2_4948	0.90	+1.1
5,704,669	+		Pf6N2E2_4948	0.90	-0.5
5,704,669	+		Pf6N2E2_4948	0.90	+1.1
5,704,669	+		Pf6N2E2_4948	0.90	+0.6
5,704,670	-		Pf6N2E2_4948	0.90	+1.1
5,704,670	-		Pf6N2E2_4948	0.90	+0.1
5,704,670	-		Pf6N2E2_4948	0.90	-0.5
5,704,884	+				-0.5
5,704,884	+				-0.7
5,704,884	+				-0.5
5,704,884	+				+0.1
5,705,324	+		Pf6N2E2_4949	0.36	+1.1
5,705,324	+		Pf6N2E2_4949	0.36	+0.1
5,705,325	-		Pf6N2E2_4949	0.37	+1.1
5,705,325	-		Pf6N2E2_4949	0.37	-3.0
5,705,325	-		Pf6N2E2_4949	0.37	+0.1
5,705,325	-		Pf6N2E2_4949	0.37	-1.3
5,705,325	-				-0.2
5,705,325	-		Pf6N2E2_4949	0.37	-0.5
5,705,325	-		Pf6N2E2_4949	0.37	-0.5
5,705,325	-		Pf6N2E2_4949	0.37	-2.0
5,705,543	+		Pf6N2E2_4949	0.60	+0.1
5,705,543	+		Pf6N2E2_4949	0.60	-0.5
5,705,543	+		Pf6N2E2_4949	0.60	-0.9
5,705,543	+		Pf6N2E2_4949	0.60	+1.1
5,705,543	+		Pf6N2E2_4949	0.60	+1.1
5,705,543	+		Pf6N2E2_4949	0.60	+0.1
5,705,543	+		Pf6N2E2_4949	0.60	+0.1
5,705,543	+		Pf6N2E2_4949	0.60	+1.1
5,705,543	+		Pf6N2E2_4949	0.60	-0.5
5,705,543	+				+1.1
5,705,543	+		Pf6N2E2_4949	0.60	+1.1
5,705,543	+		Pf6N2E2_4949	0.60	-0.5
5,705,543	+		Pf6N2E2_4949	0.60	-0.5
5,705,544	-		Pf6N2E2_4949	0.60	+0.2
5,705,544	-		Pf6N2E2_4949	0.60	-1.3
5,705,544	-		Pf6N2E2_4949	0.60	-0.5
5,705,544	-		Pf6N2E2_4949	0.60	-0.5
5,705,544	-		Pf6N2E2_4949	0.60	+1.1
5,705,544	-		Pf6N2E2_4949	0.60	+1.1
5,705,544	-		Pf6N2E2_4949	0.60	-0.3
5,705,544	-		Pf6N2E2_4949	0.60	+1.1
5,705,544	-		Pf6N2E2_4949	0.60	-0.5
5,705,544	-		Pf6N2E2_4949	0.60	-0.5
5,705,544	-		Pf6N2E2_4949	0.60	+1.1
5,705,582	+		Pf6N2E2_4949	0.64	-0.9
5,705,583	-		Pf6N2E2_4949	0.64	-0.4
5,705,583	-		Pf6N2E2_4949	0.64	-2.5
5,705,585	+		Pf6N2E2_4949	0.64	+1.7
5,705,585	+		Pf6N2E2_4949	0.64	-0.5
5,705,585	+		Pf6N2E2_4949	0.64	-0.9
5,705,585	+		Pf6N2E2_4949	0.64	-1.5
5,705,586	-		Pf6N2E2_4949	0.65	+0.9
5,705,586	-		Pf6N2E2_4949	0.65	-0.5
5,705,597	+		Pf6N2E2_4949	0.66	+1.1
5,705,598	-		Pf6N2E2_4949	0.66	+0.1
5,705,598	-		Pf6N2E2_4949	0.66	-0.7
5,705,598	-		Pf6N2E2_4949	0.66	+0.1
5,705,691	-		Pf6N2E2_4949	0.76	+1.1
5,705,904	+				+1.1
5,705,904	+				+1.1
5,705,904	+				-0.5
5,705,904	+				-0.9
5,705,905	-				-0.5
5,705,905	-				+0.3
5,705,905	-				-1.4
5,706,029	+		Pf6N2E2_4950	0.18	+1.1
5,706,029	+		Pf6N2E2_4950	0.18	-0.7
5,706,045	-		Pf6N2E2_4950	0.20	+1.1
5,706,132	+		Pf6N2E2_4950	0.34	+1.1
5,706,132	+		Pf6N2E2_4950	0.34	+0.1
5,706,132	+		Pf6N2E2_4950	0.34	+1.1
5,706,133	-		Pf6N2E2_4950	0.35	+0.1
5,706,133	-		Pf6N2E2_4950	0.35	+1.1
5,706,133	-		Pf6N2E2_4950	0.35	-0.9
5,706,246	+		Pf6N2E2_4950	0.53	+0.1
5,706,247	-		Pf6N2E2_4950	0.53	+1.1
5,706,247	-		Pf6N2E2_4950	0.53	-0.9
5,706,306	+		Pf6N2E2_4950	0.62	+1.1
5,706,307	-		Pf6N2E2_4950	0.63	-0.5
5,706,307	-		Pf6N2E2_4950	0.63	+1.1
5,706,307	-		Pf6N2E2_4950	0.63	+1.1
5,706,307	-		Pf6N2E2_4950	0.63	-0.9
5,706,307	-		Pf6N2E2_4950	0.63	+1.1
5,706,432	+		Pf6N2E2_4950	0.83	+1.1
5,706,433	-		Pf6N2E2_4950	0.83	+1.1
5,706,433	-		Pf6N2E2_4950	0.83	-0.5
5,706,597	-				+0.1
5,706,737	+				+0.1
5,706,737	+				-0.5
5,706,737	+				-0.8
5,706,741	+				+0.1
5,706,741	+				+1.1
5,706,741	+				-0.3
5,706,741	+				-0.9
5,706,741	+				-0.5
5,706,741	+				+0.1
5,706,741	+				+0.1
5,706,741	+				-0.9
5,706,741	+				-1.7
5,706,742	-				-0.8
5,706,742	-				+0.1
5,706,745	+				-0.4
5,706,745	+				+1.1
5,706,745	+				+1.1
5,706,745	+				-0.5
5,706,746	-				+0.5
5,706,746	-				+0.1
5,706,755	+				+1.1
5,706,801	-		Pf6N2E2_4951	0.14	-0.7
5,706,801	-		Pf6N2E2_4951	0.14	+1.1
5,706,801	-		Pf6N2E2_4951	0.14	+1.1