Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_473 and Pf6N2E2_474 are separated by 82 nucleotides Pf6N2E2_474 and Pf6N2E2_475 are separated by 76 nucleotides Pf6N2E2_475 and Pf6N2E2_476 are separated by 110 nucleotides
Pf6N2E2_473 - putative cytochrome p450 oxidoreductase, at 538,136 to 539,272
_473
Pf6N2E2_474 - Transcriptional regulator, ArsR family, at 539,355 to 540,110
_474
Pf6N2E2_475 - Transcriptional regulator, AraC family, at 540,187 to 540,981
_475
Pf6N2E2_476 - Permease of the drug/metabolite transporter (DMT) superfamily, at 541,092 to 542,021
_476
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1 at 538.617 kb on + strand, within Pf6N2E2_473 at 538.617 kb on + strand, within Pf6N2E2_473 at 538.617 kb on + strand, within Pf6N2E2_473 at 538.617 kb on + strand, within Pf6N2E2_473 at 538.618 kb on - strand, within Pf6N2E2_473 at 538.655 kb on - strand, within Pf6N2E2_473 at 538.655 kb on - strand, within Pf6N2E2_473 at 538.736 kb on + strand, within Pf6N2E2_473 at 539.227 kb on - strand at 539.309 kb on + strand at 539.309 kb on + strand at 539.309 kb on + strand at 539.309 kb on + strand at 539.309 kb on + strand at 539.309 kb on + strand at 539.309 kb on + strand at 539.310 kb on - strand at 539.310 kb on - strand at 539.312 kb on + strand at 539.577 kb on + strand, within Pf6N2E2_474 at 539.577 kb on + strand, within Pf6N2E2_474 at 539.578 kb on - strand, within Pf6N2E2_474 at 539.578 kb on - strand, within Pf6N2E2_474 at 539.578 kb on - strand, within Pf6N2E2_474 at 539.697 kb on + strand, within Pf6N2E2_474 at 539.705 kb on + strand, within Pf6N2E2_474 at 539.706 kb on - strand, within Pf6N2E2_474 at 540.198 kb on + strand at 540.198 kb on + strand at 540.710 kb on + strand, within Pf6N2E2_475 at 540.711 kb on - strand, within Pf6N2E2_475 at 540.711 kb on - strand, within Pf6N2E2_475 at 540.800 kb on + strand, within Pf6N2E2_475 at 540.801 kb on - strand, within Pf6N2E2_475 at 540.801 kb on - strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.845 kb on + strand, within Pf6N2E2_475 at 540.882 kb on - strand, within Pf6N2E2_475 at 540.981 kb on + strand at 541.028 kb on + strand at 541.028 kb on + strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 538,617 + Pf6N2E2_473 0.42 +0.9 538,617 + Pf6N2E2_473 0.42 -0.7 538,617 + Pf6N2E2_473 0.42 -0.1 538,617 + Pf6N2E2_473 0.42 +0.2 538,618 - Pf6N2E2_473 0.42 -0.1 538,655 - Pf6N2E2_473 0.46 +0.9 538,655 - Pf6N2E2_473 0.46 +0.9 538,736 + Pf6N2E2_473 0.53 +0.9 539,227 - -1.0 539,309 + -0.9 539,309 + +0.9 539,309 + -2.5 539,309 + +0.9 539,309 + +0.2 539,309 + -0.5 539,309 + +0.9 539,310 - -0.1 539,310 - +0.9 539,312 + +0.9 539,577 + Pf6N2E2_474 0.29 -1.4 539,577 + Pf6N2E2_474 0.29 -2.7 539,578 - Pf6N2E2_474 0.29 +0.9 539,578 - Pf6N2E2_474 0.29 +0.9 539,578 - Pf6N2E2_474 0.29 -0.9 539,697 + Pf6N2E2_474 0.45 -1.7 539,705 + Pf6N2E2_474 0.46 +0.9 539,706 - Pf6N2E2_474 0.46 -0.1 540,198 + +0.9 540,198 + -0.1 540,710 + Pf6N2E2_475 0.66 +0.9 540,711 - Pf6N2E2_475 0.66 +0.9 540,711 - Pf6N2E2_475 0.66 +0.9 540,800 + Pf6N2E2_475 0.77 -0.1 540,801 - Pf6N2E2_475 0.77 -0.1 540,801 - Pf6N2E2_475 0.77 -0.6 540,839 + Pf6N2E2_475 0.82 -1.6 540,839 + Pf6N2E2_475 0.82 +0.9 540,839 + Pf6N2E2_475 0.82 +0.9 540,840 - Pf6N2E2_475 0.82 +0.9 540,840 - Pf6N2E2_475 0.82 -0.1 540,840 - Pf6N2E2_475 0.82 +0.9 540,840 - Pf6N2E2_475 0.82 -0.7 540,840 - Pf6N2E2_475 0.82 +0.9 540,845 + Pf6N2E2_475 0.83 -0.1 540,882 - Pf6N2E2_475 0.87 +0.9 540,981 + +0.9 541,028 + +0.9 541,028 + +0.9 541,029 - -0.6 541,029 - +0.9 541,029 - +0.9 541,029 - -0.1 541,051 - -0.7
Or see this region's nucleotide sequence