Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4736

Experiment: Ying_Nucleobase14 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4735 and Pf6N2E2_4736 are separated by 295 nucleotidesPf6N2E2_4736 and Pf6N2E2_4737 are separated by 83 nucleotidesPf6N2E2_4737 and Pf6N2E2_4738 overlap by 1 nucleotides Pf6N2E2_4735 - Ribosomal protein S6 glutaminyl transferase, at 5,471,882 to 5,472,388 _4735 Pf6N2E2_4736 - YD repeat protein, at 5,472,684 to 5,473,718 _4736 Pf6N2E2_4737 - Two-component response regulator CreB, at 5,473,802 to 5,474,578 _4737 Pf6N2E2_4738 - Two-component response regulator CreC, at 5,474,578 to 5,475,996 _4738 Position (kb) 5472 5473 5474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5471.744 kb on - strandat 5471.849 kb on + strandat 5471.850 kb on - strandat 5471.876 kb on + strandat 5471.958 kb on - strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.964 kb on - strand, within Pf6N2E2_4735at 5471.964 kb on - strand, within Pf6N2E2_4735at 5471.964 kb on - strand, within Pf6N2E2_4735at 5472.125 kb on + strand, within Pf6N2E2_4735at 5472.125 kb on + strand, within Pf6N2E2_4735at 5472.126 kb on - strand, within Pf6N2E2_4735at 5472.296 kb on + strand, within Pf6N2E2_4735at 5472.296 kb on + strand, within Pf6N2E2_4735at 5472.297 kb on - strand, within Pf6N2E2_4735at 5472.373 kb on + strandat 5472.374 kb on - strandat 5472.468 kb on + strandat 5472.468 kb on + strandat 5472.468 kb on + strandat 5472.468 kb on + strandat 5472.469 kb on - strandat 5472.469 kb on - strandat 5472.469 kb on - strandat 5472.469 kb on - strandat 5472.498 kb on + strandat 5472.519 kb on + strandat 5472.595 kb on - strandat 5472.742 kb on + strandat 5472.743 kb on - strandat 5472.783 kb on + strandat 5472.800 kb on + strand, within Pf6N2E2_4736at 5472.868 kb on - strand, within Pf6N2E2_4736at 5472.914 kb on + strand, within Pf6N2E2_4736at 5472.949 kb on - strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.017 kb on - strand, within Pf6N2E2_4736at 5473.017 kb on - strand, within Pf6N2E2_4736at 5473.017 kb on - strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.050 kb on - strand, within Pf6N2E2_4736at 5473.050 kb on - strand, within Pf6N2E2_4736at 5473.053 kb on + strand, within Pf6N2E2_4736at 5473.053 kb on + strand, within Pf6N2E2_4736at 5473.054 kb on - strand, within Pf6N2E2_4736at 5473.120 kb on - strand, within Pf6N2E2_4736at 5473.120 kb on - strand, within Pf6N2E2_4736at 5473.136 kb on + strand, within Pf6N2E2_4736at 5473.136 kb on + strand, within Pf6N2E2_4736at 5473.137 kb on - strand, within Pf6N2E2_4736at 5473.178 kb on + strand, within Pf6N2E2_4736at 5473.231 kb on + strand, within Pf6N2E2_4736at 5473.231 kb on + strand, within Pf6N2E2_4736at 5473.232 kb on - strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.238 kb on - strand, within Pf6N2E2_4736at 5473.238 kb on - strand, within Pf6N2E2_4736at 5473.238 kb on - strand, within Pf6N2E2_4736at 5473.337 kb on - strand, within Pf6N2E2_4736at 5473.424 kb on + strand, within Pf6N2E2_4736at 5473.424 kb on + strand, within Pf6N2E2_4736at 5473.540 kb on - strand, within Pf6N2E2_4736at 5473.565 kb on + strand, within Pf6N2E2_4736at 5473.565 kb on + strand, within Pf6N2E2_4736at 5473.585 kb on - strand, within Pf6N2E2_4736at 5473.585 kb on - strand, within Pf6N2E2_4736at 5473.585 kb on - strand, within Pf6N2E2_4736at 5473.676 kb on - strandat 5473.692 kb on + strandat 5473.712 kb on + strandat 5473.713 kb on - strandat 5473.734 kb on + strandat 5473.734 kb on + strandat 5473.788 kb on - strandat 5473.788 kb on - strandat 5473.788 kb on - strandat 5473.799 kb on + strandat 5473.799 kb on + strandat 5473.800 kb on - strandat 5473.879 kb on - strandat 5473.879 kb on - strandat 5473.879 kb on - strandat 5473.879 kb on - strandat 5473.906 kb on + strand, within Pf6N2E2_4737at 5474.069 kb on - strand, within Pf6N2E2_4737at 5474.090 kb on - strand, within Pf6N2E2_4737at 5474.189 kb on + strand, within Pf6N2E2_4737at 5474.189 kb on + strand, within Pf6N2E2_4737at 5474.190 kb on - strand, within Pf6N2E2_4737at 5474.190 kb on - strand, within Pf6N2E2_4737at 5474.190 kb on - strand, within Pf6N2E2_4737at 5474.324 kb on + strand, within Pf6N2E2_4737at 5474.325 kb on - strand, within Pf6N2E2_4737at 5474.453 kb on + strand, within Pf6N2E2_4737at 5474.454 kb on - strand, within Pf6N2E2_4737at 5474.454 kb on - strand, within Pf6N2E2_4737at 5474.476 kb on + strand, within Pf6N2E2_4737at 5474.476 kb on + strand, within Pf6N2E2_4737at 5474.552 kb on + strandat 5474.553 kb on - strandat 5474.558 kb on + strandat 5474.559 kb on - strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.608 kb on + strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.609 kb on - strandat 5474.612 kb on + strandat 5474.612 kb on + strandat 5474.612 kb on + strandat 5474.612 kb on + strandat 5474.612 kb on + strandat 5474.613 kb on - strandat 5474.613 kb on - strandat 5474.613 kb on - strandat 5474.613 kb on - strandat 5474.613 kb on - strandat 5474.613 kb on - strandat 5474.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
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5,471,744 - +0.1
5,471,849 + +0.1
5,471,850 - +1.1
5,471,876 + +0.1
5,471,958 - Pf6N2E2_4735 0.15 -0.4
5,471,963 + Pf6N2E2_4735 0.16 +1.1
5,471,963 + Pf6N2E2_4735 0.16 +0.1
5,471,963 + Pf6N2E2_4735 0.16 -0.5
5,471,963 + Pf6N2E2_4735 0.16 -1.3
5,471,963 + Pf6N2E2_4735 0.16 +1.1
5,471,963 + Pf6N2E2_4735 0.16 +1.1
5,471,963 + Pf6N2E2_4735 0.16 +1.1
5,471,964 - Pf6N2E2_4735 0.16 +1.1
5,471,964 - Pf6N2E2_4735 0.16 +1.1
5,471,964 - Pf6N2E2_4735 0.16 +1.1
5,472,125 + Pf6N2E2_4735 0.48 +0.1
5,472,125 + Pf6N2E2_4735 0.48 +1.1
5,472,126 - Pf6N2E2_4735 0.48 +0.2
5,472,296 + Pf6N2E2_4735 0.82 -0.9
5,472,296 + Pf6N2E2_4735 0.82 +1.1
5,472,297 - Pf6N2E2_4735 0.82 -0.5
5,472,373 + +1.0
5,472,374 - -0.8
5,472,468 + +1.1
5,472,468 + +0.1
5,472,468 + +1.1
5,472,468 + +1.1
5,472,469 - +1.1
5,472,469 - -0.5
5,472,469 - +1.1
5,472,469 - +1.1
5,472,498 + +1.1
5,472,519 + -0.7
5,472,595 - -0.5
5,472,742 + +1.1
5,472,743 - +1.1
5,472,783 + -0.9
5,472,800 + Pf6N2E2_4736 0.11 +1.1
5,472,868 - Pf6N2E2_4736 0.18 +0.4
5,472,914 + Pf6N2E2_4736 0.22 +1.1
5,472,949 - Pf6N2E2_4736 0.26 -0.5
5,473,016 + Pf6N2E2_4736 0.32 -1.8
5,473,016 + Pf6N2E2_4736 0.32 +1.1
5,473,016 + Pf6N2E2_4736 0.32 +0.1
5,473,016 + Pf6N2E2_4736 0.32 +1.1
5,473,017 - Pf6N2E2_4736 0.32 +1.1
5,473,017 - Pf6N2E2_4736 0.32 -0.0
5,473,017 - Pf6N2E2_4736 0.32 -0.4
5,473,049 + Pf6N2E2_4736 0.35 +0.1
5,473,049 + Pf6N2E2_4736 0.35 -0.5
5,473,049 + Pf6N2E2_4736 0.35 -1.6
5,473,049 + Pf6N2E2_4736 0.35 +1.1
5,473,049 + Pf6N2E2_4736 0.35 +1.1
5,473,050 - Pf6N2E2_4736 0.35 -0.8
5,473,050 - Pf6N2E2_4736 0.35 +1.4
5,473,053 + Pf6N2E2_4736 0.36 +0.1
5,473,053 + Pf6N2E2_4736 0.36 +1.1
5,473,054 - Pf6N2E2_4736 0.36 -1.3
5,473,120 - Pf6N2E2_4736 0.42 +1.1
5,473,120 - Pf6N2E2_4736 0.42 +1.1
5,473,136 + Pf6N2E2_4736 0.44 +1.1
5,473,136 + Pf6N2E2_4736 0.44 +0.1
5,473,137 - Pf6N2E2_4736 0.44 +0.1
5,473,178 + Pf6N2E2_4736 0.48 +1.1
5,473,231 + Pf6N2E2_4736 0.53 +1.1
5,473,231 + Pf6N2E2_4736 0.53 +0.1
5,473,232 - Pf6N2E2_4736 0.53 +1.1
5,473,233 + Pf6N2E2_4736 0.53 +0.1
5,473,233 + Pf6N2E2_4736 0.53 +1.1
5,473,233 + Pf6N2E2_4736 0.53 -0.8
5,473,233 + Pf6N2E2_4736 0.53 +1.1
5,473,233 + Pf6N2E2_4736 0.53 +1.1
5,473,233 + Pf6N2E2_4736 0.53 +0.1
5,473,233 + Pf6N2E2_4736 0.53 -0.5
5,473,233 + Pf6N2E2_4736 0.53 -0.9
5,473,233 + Pf6N2E2_4736 0.53 -0.5
5,473,233 + Pf6N2E2_4736 0.53 +1.1
5,473,234 - Pf6N2E2_4736 0.53 +0.4
5,473,234 - Pf6N2E2_4736 0.53 +1.1
5,473,234 - Pf6N2E2_4736 0.53 -0.5
5,473,234 - Pf6N2E2_4736 0.53 -0.7
5,473,234 - Pf6N2E2_4736 0.53 +0.4
5,473,234 - Pf6N2E2_4736 0.53 -0.5
5,473,237 + Pf6N2E2_4736 0.53 -0.9
5,473,237 + Pf6N2E2_4736 0.53 +0.1
5,473,237 + Pf6N2E2_4736 0.53 +1.1
5,473,237 + Pf6N2E2_4736 0.53 -0.4
5,473,237 + Pf6N2E2_4736 0.53 -0.6
5,473,238 - Pf6N2E2_4736 0.54 +0.1
5,473,238 - Pf6N2E2_4736 0.54 +1.1
5,473,238 - Pf6N2E2_4736 0.54 +0.1
5,473,337 - Pf6N2E2_4736 0.63 +0.1
5,473,424 + Pf6N2E2_4736 0.71 +0.1
5,473,424 + Pf6N2E2_4736 0.71 +0.8
5,473,540 - Pf6N2E2_4736 0.83 -0.4
5,473,565 + Pf6N2E2_4736 0.85 +0.1
5,473,565 + Pf6N2E2_4736 0.85 +0.6
5,473,585 - Pf6N2E2_4736 0.87 -0.9
5,473,585 - Pf6N2E2_4736 0.87 +1.1
5,473,585 - Pf6N2E2_4736 0.87 +1.1
5,473,676 - -0.5
5,473,692 + -0.4
5,473,712 + -1.0
5,473,713 - +1.0
5,473,734 + +1.0
5,473,734 + +1.0
5,473,788 - +1.0
5,473,788 - -0.5
5,473,788 - -1.0
5,473,799 + +1.0
5,473,799 + +1.0
5,473,800 - +1.0
5,473,879 - +0.0
5,473,879 - -1.0
5,473,879 - +1.0
5,473,879 - +0.0
5,473,906 + Pf6N2E2_4737 0.13 -1.0
5,474,069 - Pf6N2E2_4737 0.34 +0.0
5,474,090 - Pf6N2E2_4737 0.37 -0.6
5,474,189 + Pf6N2E2_4737 0.50 +0.1
5,474,189 + Pf6N2E2_4737 0.50 -0.3
5,474,190 - Pf6N2E2_4737 0.50 -1.0
5,474,190 - Pf6N2E2_4737 0.50 +0.0
5,474,190 - Pf6N2E2_4737 0.50 -0.6
5,474,324 + Pf6N2E2_4737 0.67 -1.4
5,474,325 - Pf6N2E2_4737 0.67 +0.0
5,474,453 + Pf6N2E2_4737 0.84 +3.0
5,474,454 - Pf6N2E2_4737 0.84 +1.0
5,474,454 - Pf6N2E2_4737 0.84 -1.5
5,474,476 + Pf6N2E2_4737 0.87 +1.0
5,474,476 + Pf6N2E2_4737 0.87 +0.6
5,474,552 + +0.0
5,474,553 - -0.5
5,474,558 + -0.3
5,474,559 - -0.5
5,474,608 + -0.2
5,474,608 + +0.0
5,474,608 + -0.9
5,474,608 + +0.2
5,474,608 + -0.6
5,474,608 + +1.5
5,474,608 + -0.5
5,474,608 + +1.6
5,474,609 - +1.0
5,474,609 - +0.0
5,474,609 - -1.5
5,474,609 - +1.0
5,474,609 - -0.5
5,474,609 - +1.0
5,474,609 - -0.5
5,474,609 - +0.0
5,474,609 - +0.0
5,474,609 - +1.0
5,474,609 - -0.7
5,474,609 - -1.2
5,474,612 + -0.5
5,474,612 + +0.0
5,474,612 + +0.0
5,474,612 + +0.0
5,474,612 + +1.0
5,474,613 - +1.0
5,474,613 - +0.0
5,474,613 - +0.2
5,474,613 - -2.1
5,474,613 - +1.0
5,474,613 - -1.8
5,474,636 - +1.0

Or see this region's nucleotide sequence