Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4400 and Pf6N2E2_4401 are separated by 152 nucleotides Pf6N2E2_4401 and Pf6N2E2_4402 are separated by 187 nucleotides
Pf6N2E2_4400 - Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog, at 5,130,348 to 5,131,748
_4400
Pf6N2E2_4401 - Glycine cleavage system transcriptional activator, at 5,131,901 to 5,132,821
_4401
Pf6N2E2_4402 - Methyl-accepting chemotaxis protein, at 5,133,009 to 5,134,985
_4402
Position (kb) 5131
5132
5133 Strain fitness (log2 ratio) -2
-1
0
1 at 5130.997 kb on + strand, within Pf6N2E2_4400 at 5130.997 kb on + strand, within Pf6N2E2_4400 at 5130.997 kb on + strand, within Pf6N2E2_4400 at 5130.998 kb on - strand, within Pf6N2E2_4400 at 5130.998 kb on - strand, within Pf6N2E2_4400 at 5131.091 kb on - strand, within Pf6N2E2_4400 at 5131.109 kb on + strand, within Pf6N2E2_4400 at 5131.110 kb on - strand, within Pf6N2E2_4400 at 5131.110 kb on - strand, within Pf6N2E2_4400 at 5131.216 kb on + strand, within Pf6N2E2_4400 at 5131.216 kb on + strand, within Pf6N2E2_4400 at 5131.216 kb on + strand, within Pf6N2E2_4400 at 5131.216 kb on + strand, within Pf6N2E2_4400 at 5131.217 kb on - strand, within Pf6N2E2_4400 at 5131.321 kb on + strand, within Pf6N2E2_4400 at 5131.465 kb on - strand, within Pf6N2E2_4400 at 5131.580 kb on - strand, within Pf6N2E2_4400 at 5131.774 kb on + strand at 5131.774 kb on + strand at 5131.775 kb on - strand at 5131.840 kb on + strand at 5131.868 kb on - strand at 5131.868 kb on - strand at 5131.868 kb on - strand at 5131.926 kb on - strand at 5131.926 kb on - strand at 5132.118 kb on + strand, within Pf6N2E2_4401 at 5132.156 kb on - strand, within Pf6N2E2_4401 at 5132.340 kb on + strand, within Pf6N2E2_4401 at 5132.340 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.705 kb on + strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.706 kb on - strand, within Pf6N2E2_4401 at 5132.708 kb on + strand, within Pf6N2E2_4401 at 5132.708 kb on + strand, within Pf6N2E2_4401 at 5132.708 kb on + strand, within Pf6N2E2_4401 at 5132.708 kb on + strand, within Pf6N2E2_4401 at 5132.709 kb on - strand, within Pf6N2E2_4401 at 5132.709 kb on - strand, within Pf6N2E2_4401 at 5132.796 kb on + strand at 5132.797 kb on - strand at 5132.797 kb on - strand at 5132.877 kb on + strand at 5132.878 kb on - strand at 5132.931 kb on + strand at 5132.931 kb on + strand at 5132.931 kb on + strand at 5132.931 kb on + strand at 5132.932 kb on - strand at 5132.932 kb on - strand at 5132.932 kb on - strand at 5132.932 kb on - strand at 5132.932 kb on - strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.935 kb on + strand at 5132.936 kb on - strand at 5132.936 kb on - strand at 5132.936 kb on - strand at 5132.936 kb on - strand at 5132.936 kb on - strand at 5132.936 kb on - strand at 5132.951 kb on - strand at 5132.951 kb on - strand at 5133.043 kb on + strand at 5133.043 kb on + strand at 5133.043 kb on + strand at 5133.044 kb on - strand at 5133.044 kb on - strand at 5133.064 kb on + strand at 5133.185 kb on + strand at 5133.185 kb on + strand at 5133.185 kb on + strand at 5133.185 kb on + strand at 5133.185 kb on + strand at 5133.186 kb on - strand at 5133.186 kb on - strand at 5133.197 kb on + strand at 5133.198 kb on - strand at 5133.198 kb on - strand at 5133.198 kb on - strand at 5133.198 kb on - strand at 5133.431 kb on + strand, within Pf6N2E2_4402 at 5133.431 kb on + strand, within Pf6N2E2_4402 at 5133.431 kb on + strand, within Pf6N2E2_4402 at 5133.431 kb on + strand, within Pf6N2E2_4402 at 5133.525 kb on + strand, within Pf6N2E2_4402 at 5133.525 kb on + strand, within Pf6N2E2_4402 at 5133.525 kb on + strand, within Pf6N2E2_4402 at 5133.525 kb on + strand, within Pf6N2E2_4402 at 5133.525 kb on + strand, within Pf6N2E2_4402 at 5133.525 kb on + strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.526 kb on - strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.558 kb on + strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.559 kb on - strand, within Pf6N2E2_4402 at 5133.571 kb on - strand, within Pf6N2E2_4402 at 5133.615 kb on + strand, within Pf6N2E2_4402 at 5133.615 kb on + strand, within Pf6N2E2_4402 at 5133.615 kb on + strand, within Pf6N2E2_4402 at 5133.615 kb on + strand, within Pf6N2E2_4402 at 5133.615 kb on + strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.616 kb on - strand, within Pf6N2E2_4402 at 5133.619 kb on + strand, within Pf6N2E2_4402 at 5133.619 kb on + strand, within Pf6N2E2_4402 at 5133.619 kb on + strand, within Pf6N2E2_4402 at 5133.619 kb on + strand, within Pf6N2E2_4402 at 5133.620 kb on - strand, within Pf6N2E2_4402 at 5133.620 kb on - strand, within Pf6N2E2_4402 at 5133.630 kb on + strand, within Pf6N2E2_4402 at 5133.631 kb on - strand, within Pf6N2E2_4402
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 5,130,997 + Pf6N2E2_4400 0.46 -1.8 5,130,997 + Pf6N2E2_4400 0.46 +0.0 5,130,997 + Pf6N2E2_4400 0.46 -1.6 5,130,998 - Pf6N2E2_4400 0.46 +1.0 5,130,998 - Pf6N2E2_4400 0.46 -1.1 5,131,091 - Pf6N2E2_4400 0.53 -0.3 5,131,109 + Pf6N2E2_4400 0.54 -0.6 5,131,110 - Pf6N2E2_4400 0.54 -1.1 5,131,110 - Pf6N2E2_4400 0.54 +0.0 5,131,216 + Pf6N2E2_4400 0.62 -0.6 5,131,216 + Pf6N2E2_4400 0.62 +1.0 5,131,216 + Pf6N2E2_4400 0.62 -1.2 5,131,216 + Pf6N2E2_4400 0.62 -0.7 5,131,217 - Pf6N2E2_4400 0.62 +0.3 5,131,321 + Pf6N2E2_4400 0.69 -0.6 5,131,465 - Pf6N2E2_4400 0.80 -0.6 5,131,580 - Pf6N2E2_4400 0.88 +1.0 5,131,774 + -1.3 5,131,774 + -1.0 5,131,775 - +1.0 5,131,840 + +0.0 5,131,868 - +0.0 5,131,868 - +1.0 5,131,868 - -0.4 5,131,926 - -0.8 5,131,926 - -0.5 5,132,118 + Pf6N2E2_4401 0.24 -1.0 5,132,156 - Pf6N2E2_4401 0.28 -1.3 5,132,340 + Pf6N2E2_4401 0.48 -0.8 5,132,340 + Pf6N2E2_4401 0.48 +0.0 5,132,705 + Pf6N2E2_4401 0.87 +0.0 5,132,705 + Pf6N2E2_4401 0.87 +1.0 5,132,705 + Pf6N2E2_4401 0.87 -0.6 5,132,705 + Pf6N2E2_4401 0.87 +1.0 5,132,705 + Pf6N2E2_4401 0.87 -0.6 5,132,705 + Pf6N2E2_4401 0.87 -1.4 5,132,705 + Pf6N2E2_4401 0.87 -1.1 5,132,705 + Pf6N2E2_4401 0.87 +0.0 5,132,705 + Pf6N2E2_4401 0.87 +1.0 5,132,705 + Pf6N2E2_4401 0.87 +0.0 5,132,705 + Pf6N2E2_4401 0.87 -0.6 5,132,705 + Pf6N2E2_4401 0.87 -0.6 5,132,705 + Pf6N2E2_4401 0.87 -0.6 5,132,705 + Pf6N2E2_4401 0.87 +0.0 5,132,705 + Pf6N2E2_4401 0.87 -0.7 5,132,706 - Pf6N2E2_4401 0.87 -0.2 5,132,706 - Pf6N2E2_4401 0.87 +1.0 5,132,706 - Pf6N2E2_4401 0.87 +0.6 5,132,706 - Pf6N2E2_4401 0.87 -1.0 5,132,706 - Pf6N2E2_4401 0.87 +1.0 5,132,706 - Pf6N2E2_4401 0.87 +0.0 5,132,706 - Pf6N2E2_4401 0.87 +1.0 5,132,706 - Pf6N2E2_4401 0.87 -1.3 5,132,708 + Pf6N2E2_4401 0.88 -0.6 5,132,708 + Pf6N2E2_4401 0.88 +0.4 5,132,708 + Pf6N2E2_4401 0.88 -0.6 5,132,708 + Pf6N2E2_4401 0.88 -0.6 5,132,709 - Pf6N2E2_4401 0.88 +0.0 5,132,709 - Pf6N2E2_4401 0.88 -0.6 5,132,796 + +1.0 5,132,797 - +0.0 5,132,797 - -0.9 5,132,877 + +1.0 5,132,878 - +0.0 5,132,931 + +0.0 5,132,931 + -1.4 5,132,931 + +0.0 5,132,931 + +0.0 5,132,932 - -0.6 5,132,932 - -0.7 5,132,932 - +0.0 5,132,932 - +0.0 5,132,932 - +1.0 5,132,935 + -1.7 5,132,935 + -0.6 5,132,935 + +0.0 5,132,935 + +0.0 5,132,935 + +0.0 5,132,935 + -1.0 5,132,935 + +0.0 5,132,935 + -0.7 5,132,935 + +1.0 5,132,936 - -0.6 5,132,936 - -1.0 5,132,936 - -1.0 5,132,936 - +1.0 5,132,936 - -0.6 5,132,936 - -0.6 5,132,951 - +0.0 5,132,951 - -1.2 5,133,043 + +1.0 5,133,043 + +1.0 5,133,043 + +0.0 5,133,044 - +0.0 5,133,044 - +1.0 5,133,064 + +0.0 5,133,185 + +1.0 5,133,185 + +0.4 5,133,185 + +1.0 5,133,185 + -1.0 5,133,185 + +1.0 5,133,186 - -2.4 5,133,186 - +1.0 5,133,197 + +1.0 5,133,198 - -1.1 5,133,198 - +1.0 5,133,198 - -0.6 5,133,198 - +0.0 5,133,431 + Pf6N2E2_4402 0.21 +1.0 5,133,431 + Pf6N2E2_4402 0.21 +0.0 5,133,431 + Pf6N2E2_4402 0.21 -0.9 5,133,431 + Pf6N2E2_4402 0.21 +1.0 5,133,525 + Pf6N2E2_4402 0.26 +1.0 5,133,525 + Pf6N2E2_4402 0.26 +1.0 5,133,525 + Pf6N2E2_4402 0.26 -1.0 5,133,525 + Pf6N2E2_4402 0.26 -0.6 5,133,525 + Pf6N2E2_4402 0.26 +0.0 5,133,525 + Pf6N2E2_4402 0.26 -0.6 5,133,526 - Pf6N2E2_4402 0.26 +0.0 5,133,526 - Pf6N2E2_4402 0.26 -0.6 5,133,526 - Pf6N2E2_4402 0.26 +1.0 5,133,526 - Pf6N2E2_4402 0.26 +0.0 5,133,526 - Pf6N2E2_4402 0.26 -1.0 5,133,526 - Pf6N2E2_4402 0.26 +1.0 5,133,526 - Pf6N2E2_4402 0.26 -0.6 5,133,526 - Pf6N2E2_4402 0.26 +0.0 5,133,526 - Pf6N2E2_4402 0.26 +1.0 5,133,526 - Pf6N2E2_4402 0.26 -0.6 5,133,526 - Pf6N2E2_4402 0.26 +1.0 5,133,558 + Pf6N2E2_4402 0.28 +0.0 5,133,558 + Pf6N2E2_4402 0.28 -0.6 5,133,558 + Pf6N2E2_4402 0.28 +0.0 5,133,558 + Pf6N2E2_4402 0.28 -1.0 5,133,558 + Pf6N2E2_4402 0.28 +1.0 5,133,558 + Pf6N2E2_4402 0.28 -0.6 5,133,558 + Pf6N2E2_4402 0.28 -1.3 5,133,558 + Pf6N2E2_4402 0.28 +1.0 5,133,558 + Pf6N2E2_4402 0.28 -1.8 5,133,558 + Pf6N2E2_4402 0.28 +1.0 5,133,558 + Pf6N2E2_4402 0.28 -0.7 5,133,559 - Pf6N2E2_4402 0.28 +0.0 5,133,559 - Pf6N2E2_4402 0.28 +1.0 5,133,559 - Pf6N2E2_4402 0.28 +1.0 5,133,559 - Pf6N2E2_4402 0.28 +1.0 5,133,559 - Pf6N2E2_4402 0.28 -0.8 5,133,559 - Pf6N2E2_4402 0.28 -0.6 5,133,559 - Pf6N2E2_4402 0.28 -1.0 5,133,559 - Pf6N2E2_4402 0.28 +1.0 5,133,559 - Pf6N2E2_4402 0.28 +1.0 5,133,559 - Pf6N2E2_4402 0.28 +1.0 5,133,571 - Pf6N2E2_4402 0.28 +1.0 5,133,615 + Pf6N2E2_4402 0.31 -1.0 5,133,615 + Pf6N2E2_4402 0.31 -1.3 5,133,615 + Pf6N2E2_4402 0.31 +1.0 5,133,615 + Pf6N2E2_4402 0.31 +1.0 5,133,615 + Pf6N2E2_4402 0.31 -0.8 5,133,616 - Pf6N2E2_4402 0.31 -1.1 5,133,616 - Pf6N2E2_4402 0.31 +0.0 5,133,616 - Pf6N2E2_4402 0.31 +0.0 5,133,616 - Pf6N2E2_4402 0.31 +1.0 5,133,616 - Pf6N2E2_4402 0.31 +1.0 5,133,616 - Pf6N2E2_4402 0.31 +0.0 5,133,616 - Pf6N2E2_4402 0.31 +0.0 5,133,616 - Pf6N2E2_4402 0.31 -0.8 5,133,616 - Pf6N2E2_4402 0.31 +1.0 5,133,616 - Pf6N2E2_4402 0.31 -0.1 5,133,619 + Pf6N2E2_4402 0.31 +0.0 5,133,619 + Pf6N2E2_4402 0.31 -1.0 5,133,619 + Pf6N2E2_4402 0.31 +1.0 5,133,619 + Pf6N2E2_4402 0.31 +1.0 5,133,620 - Pf6N2E2_4402 0.31 -0.9 5,133,620 - Pf6N2E2_4402 0.31 +1.0 5,133,630 + Pf6N2E2_4402 0.31 +0.0 5,133,631 - Pf6N2E2_4402 0.31 -0.9
Or see this region's nucleotide sequence