Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3203

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
3,702,437	+				+1.0
3,702,437	+				+1.0
3,702,437	+				+1.0
3,702,437	+				+0.0
3,702,438	-				-1.3
3,702,438	-				-0.3
3,702,438	-				-0.9
3,702,438	-				+1.0
3,702,438	-				+1.0
3,702,438	-				-1.0
3,702,438	-				-0.2
3,702,438	-				-0.6
3,702,438	-				+0.0
3,702,438	-				+0.0
3,702,438	-				+0.0
3,702,442	-				+1.0
3,702,587	+				+1.0
3,702,588	-				+0.0
3,702,668	+		Pf6N2E2_3202	0.10	-0.6
3,702,668	+		Pf6N2E2_3202	0.10	+1.0
3,702,668	+		Pf6N2E2_3202	0.10	+0.0
3,702,668	+		Pf6N2E2_3202	0.10	-0.8
3,702,668	+		Pf6N2E2_3202	0.10	+0.0
3,702,669	-		Pf6N2E2_3202	0.10	+0.0
3,702,669	-		Pf6N2E2_3202	0.10	+0.0
3,702,669	-		Pf6N2E2_3202	0.10	+0.0
3,702,669	-		Pf6N2E2_3202	0.10	+0.0
3,702,679	+		Pf6N2E2_3202	0.12	+1.0
3,702,680	-		Pf6N2E2_3202	0.12	-0.6
3,702,780	+		Pf6N2E2_3202	0.25	+1.0
3,702,780	+		Pf6N2E2_3202	0.25	+1.0
3,702,781	-		Pf6N2E2_3202	0.25	-0.6
3,702,781	-		Pf6N2E2_3202	0.25	+1.0
3,702,781	-		Pf6N2E2_3202	0.25	-0.9
3,702,781	-		Pf6N2E2_3202	0.25	-0.6
3,702,781	-		Pf6N2E2_3202	0.25	+1.0
3,702,783	+		Pf6N2E2_3202	0.25	+1.0
3,702,783	+		Pf6N2E2_3202	0.25	+1.0
3,702,784	-		Pf6N2E2_3202	0.25	+0.0
3,702,784	-		Pf6N2E2_3202	0.25	+1.0
3,702,784	-		Pf6N2E2_3202	0.25	-1.1
3,702,989	-		Pf6N2E2_3202	0.51	+0.6
3,703,027	-		Pf6N2E2_3202	0.56	-0.3
3,703,027	-		Pf6N2E2_3202	0.56	+0.0
3,703,027	-		Pf6N2E2_3202	0.56	+1.0
3,703,324	-				+1.0
3,703,324	-				+0.0
3,703,324	-				-0.6
3,703,324	-				+1.0
3,703,324	-				+0.0
3,703,326	+				+1.0
3,703,326	+				-1.5
3,703,327	-				+1.0
3,703,327	-				+0.0
3,703,327	-				+0.0
3,703,396	-				+1.0
3,703,423	+				+1.0
3,703,424	-				+1.0
3,703,552	+		Pf6N2E2_3203	0.18	-0.6
3,703,724	-		Pf6N2E2_3203	0.38	+1.0
3,703,724	-		Pf6N2E2_3203	0.38	-1.3
3,703,724	-		Pf6N2E2_3203	0.38	-1.8
3,703,801	+		Pf6N2E2_3203	0.46	+0.0
3,703,801	+		Pf6N2E2_3203	0.46	+1.0
3,703,801	+		Pf6N2E2_3203	0.46	+0.0
3,703,801	+		Pf6N2E2_3203	0.46	+0.0
3,703,801	+		Pf6N2E2_3203	0.46	-0.6
3,703,802	-		Pf6N2E2_3203	0.46	+1.0
3,703,958	-		Pf6N2E2_3203	0.64	-1.0
3,703,958	-		Pf6N2E2_3203	0.64	-1.0
3,704,107	+		Pf6N2E2_3203	0.81	-0.9
3,704,107	+		Pf6N2E2_3203	0.81	+1.0
3,704,108	-		Pf6N2E2_3203	0.81	+1.0
3,704,108	-		Pf6N2E2_3203	0.81	-2.2
3,704,108	-		Pf6N2E2_3203	0.81	+0.0
3,704,117	+		Pf6N2E2_3203	0.82	-1.5
3,704,178	+		Pf6N2E2_3203	0.89	-0.6
3,704,299	+				+0.0
3,704,299	+				-0.7
3,704,300	-				+1.0
3,704,300	-				+0.0
3,704,300	-				-1.4
3,704,371	+				+1.0
3,704,371	+				+0.0
3,704,371	+				+1.0
3,704,372	-				-1.0
3,704,372	-				-0.6
3,704,372	-				-0.6
3,704,372	-				+1.0
3,704,402	-		Pf6N2E2_3204	0.15	+1.0
3,704,402	-		Pf6N2E2_3204	0.15	+1.0
3,704,854	+		Pf6N2E2_3205	0.75	+0.0
3,704,854	+		Pf6N2E2_3205	0.75	+1.0
3,704,854	+		Pf6N2E2_3205	0.75	+1.0
3,704,855	-		Pf6N2E2_3205	0.75	-0.3
3,704,855	-		Pf6N2E2_3205	0.75	+0.0
3,704,940	+				-0.4
3,704,940	+				+1.0
3,704,941	-				-1.0
3,704,954	+				-0.6
3,704,955	-				+0.0
3,704,955	-				-1.3
3,704,955	-				-0.7
3,704,958	+				+1.0
3,704,958	+				+0.0
3,704,959	-				+1.0
3,704,959	-				-0.8
3,704,967	+				+2.0
3,704,967	+				-0.6
3,705,011	+				+1.0
3,705,011	+				-0.6
3,705,012	-				+1.0
3,705,012	-				+0.0
3,705,012	-				+1.0
3,705,032	+				-0.6
3,705,032	+				+0.0
3,705,033	-				+0.0
3,705,033	-				+1.0
3,705,033	-				-0.6
3,705,033	-				-0.7
3,705,033	-				+1.0
3,705,044	-				+1.0
3,705,075	-		Pf6N2E2_3206	0.16	-0.8
3,705,075	-		Pf6N2E2_3206	0.16	+0.0