Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3139

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
3,630,330	+				+1.0
3,630,331	-				+1.0
3,630,398	+				+0.0
3,630,398	+				-1.5
3,630,398	+				-2.0
3,630,398	+				+1.0
3,630,398	+				+0.0
3,630,399	-				-2.0
3,630,399	-				+0.0
3,630,399	-				+1.0
3,630,957	-		Pf6N2E2_3138	0.72	+1.0
3,630,968	+		Pf6N2E2_3138	0.74	+0.6
3,630,969	-		Pf6N2E2_3138	0.74	-1.0
3,631,043	+		Pf6N2E2_3138	0.88	-1.0
3,631,043	+		Pf6N2E2_3138	0.88	+1.0
3,631,044	-		Pf6N2E2_3138	0.88	-1.0
3,631,044	-		Pf6N2E2_3138	0.88	-0.8
3,631,044	-		Pf6N2E2_3138	0.88	-1.0
3,631,044	-		Pf6N2E2_3138	0.88	-1.1
3,631,085	+				+1.0
3,631,085	+				-1.6
3,631,085	+				-0.7
3,631,123	+				+1.0
3,631,123	+				+1.0
3,631,123	+				+1.0
3,631,208	-				-1.2
3,631,212	+				+0.1
3,631,212	+				+1.0
3,631,212	+				-1.4
3,631,213	-				-0.8
3,631,213	-				-1.2
3,631,213	-				+1.0
3,631,222	+				+1.0
3,631,415	+		Pf6N2E2_3139	0.13	-0.8
3,631,415	+		Pf6N2E2_3139	0.13	-0.6
3,631,415	+		Pf6N2E2_3139	0.13	-1.0
3,631,416	-		Pf6N2E2_3139	0.13	-0.8
3,631,416	-		Pf6N2E2_3139	0.13	+0.0
3,631,416	-		Pf6N2E2_3139	0.13	+0.0
3,631,416	-		Pf6N2E2_3139	0.13	+1.0
3,631,416	-		Pf6N2E2_3139	0.13	-1.3
3,631,416	-		Pf6N2E2_3139	0.13	+1.0
3,631,418	-		Pf6N2E2_3139	0.14	+1.0
3,631,418	-		Pf6N2E2_3139	0.14	+0.4
3,631,418	-		Pf6N2E2_3139	0.14	-1.0
3,631,712	-		Pf6N2E2_3139	0.38	-1.0
3,631,864	+		Pf6N2E2_3139	0.51	+1.0
3,631,865	-		Pf6N2E2_3139	0.51	-0.8
3,631,865	-		Pf6N2E2_3139	0.51	-0.8
3,632,125	+		Pf6N2E2_3139	0.72	+1.0
3,632,126	-		Pf6N2E2_3139	0.73	+0.0
3,632,229	+		Pf6N2E2_3139	0.81	+0.0
3,632,229	+		Pf6N2E2_3139	0.81	+0.0
3,632,230	-		Pf6N2E2_3139	0.81	+1.0
3,632,522	+				+0.4
3,632,664	+				+1.0
3,632,665	-				+1.0
3,632,665	-				+1.0
3,632,665	-				+1.0
3,632,665	-				+1.0
3,632,776	+		Pf6N2E2_3140	0.30	+1.0
3,632,777	-		Pf6N2E2_3140	0.31	-0.6
3,632,777	-		Pf6N2E2_3140	0.31	-0.5
3,632,777	-		Pf6N2E2_3140	0.31	+0.4
3,632,934	-		Pf6N2E2_3140	0.85	-1.5
3,632,959	+				+1.0
3,632,959	+				-0.2
3,632,960	-				+1.0
3,632,967	+				+0.0
3,632,993	-				-1.0
3,633,020	+				+1.0
3,633,021	-				-3.5
3,633,021	-				+1.0
3,633,021	-				+1.0
3,633,021	-				+0.0
3,633,021	-				+1.0
3,633,021	-				+1.0
3,633,021	-				+1.0
3,633,106	+				+1.0
3,633,106	+				+0.0
3,633,106	+				-1.6
3,633,106	+				-0.5
3,633,106	+				+0.0
3,633,249	+				+0.0
3,633,249	+				-1.0
3,633,250	-				+1.0
3,633,250	-				+1.0
3,633,250	-				-0.9
3,633,250	-				-0.8
3,633,270	+				-0.6
3,633,271	-				+0.0
3,633,271	-				+1.0
3,633,271	-				+0.0
3,633,438	-		Pf6N2E2_3141	0.20	+1.0
3,633,451	-		Pf6N2E2_3141	0.21	+1.0