Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2430

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,878,224	+		Pf6N2E2_2429	0.46	-0.0
2,878,224	+		Pf6N2E2_2429	0.46	+1.0
2,878,224	+		Pf6N2E2_2429	0.46	-0.0
2,878,224	+		Pf6N2E2_2429	0.46	+1.0
2,878,225	-		Pf6N2E2_2429	0.46	-0.0
2,878,225	-		Pf6N2E2_2429	0.46	+1.0
2,878,225	-		Pf6N2E2_2429	0.46	+1.0
2,878,225	-		Pf6N2E2_2429	0.46	+1.0
2,878,225	-		Pf6N2E2_2429	0.46	+1.0
2,878,225	-		Pf6N2E2_2429	0.46	-0.6
2,878,371	+		Pf6N2E2_2429	0.54	+1.0
2,878,536	+		Pf6N2E2_2429	0.64	-0.0
2,878,536	+		Pf6N2E2_2429	0.64	+1.0
2,878,536	+		Pf6N2E2_2429	0.64	+1.0
2,878,537	-		Pf6N2E2_2429	0.64	-0.0
2,878,753	+		Pf6N2E2_2429	0.76	-0.0
2,878,923	+		Pf6N2E2_2429	0.86	+1.0
2,879,126	+				-0.6
2,879,126	+				-1.7
2,879,225	+				-0.6
2,879,225	+				+1.0
2,879,225	+				-0.0
2,879,225	+				-0.6
2,879,225	+				+1.0
2,879,225	+				-0.0
2,879,226	-				+1.0
2,879,226	-				-1.2
2,879,226	-				-0.0
2,879,226	-				+1.0
2,879,226	-				-0.9
2,879,226	-				+1.0
2,879,276	+				+1.0
2,879,276	+				+1.0
2,879,277	-				-1.0
2,879,620	+		Pf6N2E2_2430	0.37	-1.4
2,879,621	-		Pf6N2E2_2430	0.37	-0.6
2,879,979	-		Pf6N2E2_2430	0.67	-1.4
2,880,108	+		Pf6N2E2_2430	0.77	+1.0
2,880,108	+		Pf6N2E2_2430	0.77	-0.0
2,880,162	-		Pf6N2E2_2430	0.82	-0.6
2,880,162	-		Pf6N2E2_2430	0.82	-0.6
2,880,178	+		Pf6N2E2_2430	0.83	+1.0
2,880,178	+		Pf6N2E2_2430	0.83	+1.0
2,880,178	+		Pf6N2E2_2430	0.83	-0.0
2,880,178	+		Pf6N2E2_2430	0.83	+0.4
2,880,178	+		Pf6N2E2_2430	0.83	-0.6
2,880,178	+		Pf6N2E2_2430	0.83	+1.0
2,880,179	-		Pf6N2E2_2430	0.83	+1.0
2,880,179	-		Pf6N2E2_2430	0.83	-1.9
2,880,179	-		Pf6N2E2_2430	0.83	-0.6
2,880,179	-		Pf6N2E2_2430	0.83	-1.0
2,880,179	-		Pf6N2E2_2430	0.83	+1.0
2,880,179	-		Pf6N2E2_2430	0.83	-0.6
2,880,179	-		Pf6N2E2_2430	0.83	-0.6
2,880,179	-		Pf6N2E2_2430	0.83	-0.0
2,880,180	+		Pf6N2E2_2430	0.83	-0.6
2,880,189	-		Pf6N2E2_2430	0.84	-0.6
2,880,306	+				-0.9
2,880,306	+				-2.3
2,880,306	+				-1.0
2,880,307	-				+1.0
2,880,307	-				-1.0
2,880,384	+				-0.6
2,880,472	-		Pf6N2E2_2431	0.53	+0.5
2,880,552	-				+1.2
2,880,560	+				+1.0
2,880,617	+				-0.6
2,880,617	+				-0.0
2,880,617	+				+1.0
2,880,617	+				-0.4
2,880,617	+				-0.0
2,880,617	+				-0.0
2,880,618	-				-0.6
2,880,618	-				-1.0
2,880,618	-				-0.1
2,880,658	+				-1.2
2,880,658	+				+1.5
2,880,658	+				-0.0
2,880,658	+				-0.6
2,880,659	-				-0.3
2,880,682	+				+1.0
2,880,706	+				-0.0
2,880,952	+		Pf6N2E2_2432	0.73	-1.5
2,880,952	+		Pf6N2E2_2432	0.73	-0.6
2,880,952	+		Pf6N2E2_2432	0.73	-0.2
2,880,953	-		Pf6N2E2_2432	0.74	+1.0
2,880,953	-		Pf6N2E2_2432	0.74	+1.0
2,880,953	-		Pf6N2E2_2432	0.74	-1.4
2,880,953	-		Pf6N2E2_2432	0.74	-0.0
2,880,953	-		Pf6N2E2_2432	0.74	-0.0
2,880,953	-		Pf6N2E2_2432	0.74	-0.6
2,880,953	-		Pf6N2E2_2432	0.74	-0.6
2,880,953	-		Pf6N2E2_2432	0.74	+1.0
2,880,953	-		Pf6N2E2_2432	0.74	-0.0
2,880,953	-		Pf6N2E2_2432	0.74	-0.0
2,880,956	+		Pf6N2E2_2432	0.75	+1.0
2,880,956	+		Pf6N2E2_2432	0.75	-0.9
2,880,956	+		Pf6N2E2_2432	0.75	-1.0
2,880,956	+		Pf6N2E2_2432	0.75	-0.0
2,880,956	+		Pf6N2E2_2432	0.75	-0.3
2,880,956	+		Pf6N2E2_2432	0.75	+1.0
2,880,956	+		Pf6N2E2_2432	0.75	-0.0
2,880,957	-		Pf6N2E2_2432	0.75	-0.0
2,880,957	-		Pf6N2E2_2432	0.75	-1.6
2,880,957	-		Pf6N2E2_2432	0.75	-0.0
2,880,957	-		Pf6N2E2_2432	0.75	+1.0
2,881,272	+		Pf6N2E2_2433	0.60	+1.0
2,881,272	+		Pf6N2E2_2433	0.60	-0.8
2,881,272	+		Pf6N2E2_2433	0.60	-0.0
2,881,273	-		Pf6N2E2_2433	0.61	+1.0
2,881,273	-		Pf6N2E2_2433	0.61	-1.1
2,881,273	-		Pf6N2E2_2433	0.61	-0.0
2,881,273	-		Pf6N2E2_2433	0.61	+1.0
2,881,308	+		Pf6N2E2_2433	0.69	-1.6
2,881,308	+		Pf6N2E2_2433	0.69	+1.0
2,881,308	+		Pf6N2E2_2433	0.69	-1.6
2,881,357	-		Pf6N2E2_2433	0.82	+1.0
2,881,357	-		Pf6N2E2_2433	0.82	+1.0