Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1120 and Pf6N2E2_1121 are separated by 137 nucleotides Pf6N2E2_1121 and Pf6N2E2_1122 are separated by 64 nucleotides Pf6N2E2_1122 and Pf6N2E2_1123 are separated by 13 nucleotides
Pf6N2E2_1120 - TonB-dependent receptor, in a cluster with 3-phytase, at 1,314,131 to 1,316,653
_1120
Pf6N2E2_1121 - 3-phytase precursor (EC 3.1.3.8), at 1,316,791 to 1,318,734
_1121
Pf6N2E2_1122 - MotA/TolQ/ExbB proton channel family protein, at 1,318,799 to 1,319,506
_1122
Pf6N2E2_1123 - Tol biopolymer transport system, TolR protein, at 1,319,520 to 1,319,966
_1123
Position (kb) 1316
1317
1318
1319 Strain fitness (log2 ratio) -2
-1
0
1 at 1315.817 kb on + strand, within Pf6N2E2_1120 at 1315.818 kb on - strand, within Pf6N2E2_1120 at 1315.818 kb on - strand, within Pf6N2E2_1120 at 1315.818 kb on - strand, within Pf6N2E2_1120 at 1316.141 kb on + strand, within Pf6N2E2_1120 at 1316.141 kb on + strand, within Pf6N2E2_1120 at 1316.141 kb on + strand, within Pf6N2E2_1120 at 1316.142 kb on - strand, within Pf6N2E2_1120 at 1316.142 kb on - strand, within Pf6N2E2_1120 at 1316.168 kb on + strand, within Pf6N2E2_1120 at 1316.168 kb on + strand, within Pf6N2E2_1120 at 1316.314 kb on + strand, within Pf6N2E2_1120 at 1316.314 kb on + strand, within Pf6N2E2_1120 at 1316.315 kb on - strand, within Pf6N2E2_1120 at 1316.405 kb on + strand at 1316.406 kb on - strand at 1316.562 kb on - strand at 1316.588 kb on + strand at 1316.588 kb on + strand at 1316.601 kb on - strand at 1316.601 kb on - strand at 1316.601 kb on - strand at 1316.761 kb on - strand at 1316.761 kb on - strand at 1316.906 kb on + strand at 1316.907 kb on - strand at 1316.907 kb on - strand at 1316.937 kb on - strand at 1317.398 kb on + strand, within Pf6N2E2_1121 at 1317.433 kb on + strand, within Pf6N2E2_1121 at 1317.580 kb on + strand, within Pf6N2E2_1121 at 1317.581 kb on - strand, within Pf6N2E2_1121 at 1317.913 kb on + strand, within Pf6N2E2_1121 at 1317.914 kb on - strand, within Pf6N2E2_1121 at 1317.914 kb on - strand, within Pf6N2E2_1121 at 1318.162 kb on + strand, within Pf6N2E2_1121 at 1318.162 kb on + strand, within Pf6N2E2_1121 at 1318.162 kb on + strand, within Pf6N2E2_1121 at 1318.163 kb on - strand, within Pf6N2E2_1121 at 1318.163 kb on - strand, within Pf6N2E2_1121 at 1318.328 kb on + strand, within Pf6N2E2_1121 at 1318.328 kb on + strand, within Pf6N2E2_1121 at 1318.328 kb on + strand, within Pf6N2E2_1121 at 1318.328 kb on + strand, within Pf6N2E2_1121 at 1318.328 kb on + strand, within Pf6N2E2_1121 at 1318.328 kb on + strand, within Pf6N2E2_1121 at 1318.329 kb on - strand, within Pf6N2E2_1121 at 1318.329 kb on - strand, within Pf6N2E2_1121 at 1318.432 kb on + strand, within Pf6N2E2_1121 at 1318.432 kb on + strand, within Pf6N2E2_1121 at 1318.432 kb on + strand, within Pf6N2E2_1121 at 1318.453 kb on + strand, within Pf6N2E2_1121 at 1318.486 kb on + strand, within Pf6N2E2_1121 at 1318.486 kb on + strand, within Pf6N2E2_1121 at 1318.514 kb on - strand, within Pf6N2E2_1121 at 1318.514 kb on - strand, within Pf6N2E2_1121 at 1318.775 kb on - strand at 1318.775 kb on - strand at 1318.907 kb on + strand, within Pf6N2E2_1122 at 1318.908 kb on - strand, within Pf6N2E2_1122 at 1319.006 kb on + strand, within Pf6N2E2_1122 at 1319.170 kb on - strand, within Pf6N2E2_1122 at 1319.170 kb on - strand, within Pf6N2E2_1122 at 1319.170 kb on - strand, within Pf6N2E2_1122 at 1319.170 kb on - strand, within Pf6N2E2_1122 at 1319.223 kb on - strand at 1319.381 kb on + strand, within Pf6N2E2_1122 at 1319.381 kb on + strand, within Pf6N2E2_1122 at 1319.427 kb on - strand, within Pf6N2E2_1122 at 1319.427 kb on - strand, within Pf6N2E2_1122 at 1319.427 kb on - strand, within Pf6N2E2_1122 at 1319.577 kb on + strand, within Pf6N2E2_1123 at 1319.577 kb on + strand, within Pf6N2E2_1123
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 1,315,817 + Pf6N2E2_1120 0.67 -0.1 1,315,818 - Pf6N2E2_1120 0.67 +0.9 1,315,818 - Pf6N2E2_1120 0.67 +0.9 1,315,818 - Pf6N2E2_1120 0.67 +0.9 1,316,141 + Pf6N2E2_1120 0.80 +0.9 1,316,141 + Pf6N2E2_1120 0.80 -1.1 1,316,141 + Pf6N2E2_1120 0.80 -0.1 1,316,142 - Pf6N2E2_1120 0.80 +0.9 1,316,142 - Pf6N2E2_1120 0.80 +0.6 1,316,168 + Pf6N2E2_1120 0.81 -0.5 1,316,168 + Pf6N2E2_1120 0.81 +0.9 1,316,314 + Pf6N2E2_1120 0.87 +0.9 1,316,314 + Pf6N2E2_1120 0.87 -1.7 1,316,315 - Pf6N2E2_1120 0.87 -0.1 1,316,405 + +0.9 1,316,406 - -1.5 1,316,562 - -1.5 1,316,588 + -0.9 1,316,588 + +0.9 1,316,601 - +0.9 1,316,601 - +1.6 1,316,601 - +0.9 1,316,761 - -0.7 1,316,761 - +0.9 1,316,906 + -1.4 1,316,907 - +0.9 1,316,907 - +0.9 1,316,937 - +0.9 1,317,398 + Pf6N2E2_1121 0.31 +0.9 1,317,433 + Pf6N2E2_1121 0.33 -1.5 1,317,580 + Pf6N2E2_1121 0.41 -2.1 1,317,581 - Pf6N2E2_1121 0.41 -0.1 1,317,913 + Pf6N2E2_1121 0.58 +0.9 1,317,914 - Pf6N2E2_1121 0.58 -0.9 1,317,914 - Pf6N2E2_1121 0.58 -1.3 1,318,162 + Pf6N2E2_1121 0.71 +0.9 1,318,162 + Pf6N2E2_1121 0.71 +0.9 1,318,162 + Pf6N2E2_1121 0.71 -0.9 1,318,163 - Pf6N2E2_1121 0.71 -0.1 1,318,163 - Pf6N2E2_1121 0.71 +0.9 1,318,328 + Pf6N2E2_1121 0.79 -0.1 1,318,328 + Pf6N2E2_1121 0.79 +0.9 1,318,328 + Pf6N2E2_1121 0.79 -2.0 1,318,328 + Pf6N2E2_1121 0.79 +0.0 1,318,328 + Pf6N2E2_1121 0.79 -0.1 1,318,328 + Pf6N2E2_1121 0.79 -0.7 1,318,329 - Pf6N2E2_1121 0.79 +0.9 1,318,329 - Pf6N2E2_1121 0.79 -0.1 1,318,432 + Pf6N2E2_1121 0.84 -0.1 1,318,432 + Pf6N2E2_1121 0.84 -0.7 1,318,432 + Pf6N2E2_1121 0.84 +0.9 1,318,453 + Pf6N2E2_1121 0.85 +0.9 1,318,486 + Pf6N2E2_1121 0.87 -0.1 1,318,486 + Pf6N2E2_1121 0.87 +0.9 1,318,514 - Pf6N2E2_1121 0.89 -1.0 1,318,514 - Pf6N2E2_1121 0.89 +0.9 1,318,775 - -0.1 1,318,775 - +0.9 1,318,907 + Pf6N2E2_1122 0.15 +0.9 1,318,908 - Pf6N2E2_1122 0.15 -0.1 1,319,006 + Pf6N2E2_1122 0.29 +0.9 1,319,170 - Pf6N2E2_1122 0.52 -1.0 1,319,170 - Pf6N2E2_1122 0.52 +0.9 1,319,170 - Pf6N2E2_1122 0.52 -0.1 1,319,170 - Pf6N2E2_1122 0.52 -0.7 1,319,223 - -1.0 1,319,381 + Pf6N2E2_1122 0.82 -0.1 1,319,381 + Pf6N2E2_1122 0.82 -0.1 1,319,427 - Pf6N2E2_1122 0.89 -0.7 1,319,427 - Pf6N2E2_1122 0.89 -0.7 1,319,427 - Pf6N2E2_1122 0.89 +0.9 1,319,577 + Pf6N2E2_1123 0.13 +0.9 1,319,577 + Pf6N2E2_1123 0.13 +0.9
Or see this region's nucleotide sequence