Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5033 and Pf6N2E2_5034 are separated by 227 nucleotides Pf6N2E2_5034 and Pf6N2E2_5035 are separated by 42 nucleotides Pf6N2E2_5035 and Pf6N2E2_5036 are separated by 184 nucleotides
Pf6N2E2_5033 - Channel-forming transporter/cytolysins activator of TpsB family, at 5,808,698 to 5,810,347
_5033
Pf6N2E2_5034 - hypothetical protein, at 5,810,575 to 5,811,198
_5034
Pf6N2E2_5035 - FIG00954854: hypothetical protein, at 5,811,241 to 5,811,735
_5035
Pf6N2E2_5036 - Cobalt-zinc-cadmium resistance protein, at 5,811,920 to 5,812,813
_5036
Position (kb) 5811
5812 Strain fitness (log2 ratio) -2
-1
0
1 at 5810.341 kb on + strand at 5810.341 kb on + strand at 5810.341 kb on + strand at 5810.341 kb on + strand at 5810.341 kb on + strand at 5810.342 kb on - strand at 5810.342 kb on - strand at 5810.342 kb on - strand at 5810.342 kb on - strand at 5810.411 kb on + strand at 5810.412 kb on - strand at 5810.447 kb on + strand at 5810.447 kb on + strand at 5810.447 kb on + strand at 5810.448 kb on - strand at 5810.448 kb on - strand at 5810.486 kb on + strand at 5810.487 kb on - strand at 5810.487 kb on - strand at 5810.487 kb on - strand at 5810.487 kb on - strand at 5810.487 kb on - strand at 5810.487 kb on - strand at 5810.487 kb on - strand at 5810.516 kb on + strand at 5810.516 kb on + strand at 5810.638 kb on + strand, within Pf6N2E2_5034 at 5810.691 kb on + strand, within Pf6N2E2_5034 at 5810.691 kb on + strand, within Pf6N2E2_5034 at 5810.691 kb on + strand, within Pf6N2E2_5034 at 5810.692 kb on - strand, within Pf6N2E2_5034 at 5810.692 kb on - strand, within Pf6N2E2_5034 at 5810.692 kb on - strand, within Pf6N2E2_5034 at 5810.692 kb on - strand, within Pf6N2E2_5034 at 5810.869 kb on + strand, within Pf6N2E2_5034 at 5810.953 kb on + strand, within Pf6N2E2_5034 at 5810.953 kb on + strand, within Pf6N2E2_5034 at 5810.954 kb on - strand, within Pf6N2E2_5034 at 5810.971 kb on + strand, within Pf6N2E2_5034 at 5810.971 kb on + strand, within Pf6N2E2_5034 at 5810.971 kb on + strand, within Pf6N2E2_5034 at 5811.031 kb on - strand, within Pf6N2E2_5034 at 5811.041 kb on + strand, within Pf6N2E2_5034 at 5811.092 kb on - strand, within Pf6N2E2_5034 at 5811.238 kb on + strand at 5811.239 kb on - strand at 5811.276 kb on - strand at 5811.281 kb on - strand at 5811.295 kb on + strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.296 kb on - strand, within Pf6N2E2_5035 at 5811.301 kb on + strand, within Pf6N2E2_5035 at 5811.302 kb on - strand, within Pf6N2E2_5035 at 5811.340 kb on + strand, within Pf6N2E2_5035 at 5811.340 kb on + strand, within Pf6N2E2_5035 at 5811.340 kb on + strand, within Pf6N2E2_5035 at 5811.340 kb on + strand, within Pf6N2E2_5035 at 5811.341 kb on - strand, within Pf6N2E2_5035 at 5811.391 kb on + strand, within Pf6N2E2_5035 at 5811.445 kb on + strand, within Pf6N2E2_5035 at 5811.446 kb on - strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.448 kb on + strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.449 kb on - strand, within Pf6N2E2_5035 at 5811.454 kb on + strand, within Pf6N2E2_5035 at 5811.454 kb on + strand, within Pf6N2E2_5035 at 5811.454 kb on + strand, within Pf6N2E2_5035 at 5811.454 kb on + strand, within Pf6N2E2_5035 at 5811.455 kb on - strand, within Pf6N2E2_5035 at 5811.455 kb on - strand, within Pf6N2E2_5035 at 5811.455 kb on - strand, within Pf6N2E2_5035 at 5811.455 kb on - strand, within Pf6N2E2_5035 at 5811.475 kb on + strand, within Pf6N2E2_5035 at 5811.475 kb on + strand, within Pf6N2E2_5035 at 5811.475 kb on + strand, within Pf6N2E2_5035 at 5811.475 kb on + strand, within Pf6N2E2_5035 at 5811.476 kb on - strand, within Pf6N2E2_5035 at 5811.476 kb on - strand, within Pf6N2E2_5035 at 5811.476 kb on - strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.643 kb on + strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.644 kb on - strand, within Pf6N2E2_5035 at 5811.650 kb on - strand, within Pf6N2E2_5035 at 5811.679 kb on + strand, within Pf6N2E2_5035 at 5811.730 kb on + strand at 5811.730 kb on + strand at 5811.730 kb on + strand at 5811.731 kb on - strand at 5811.731 kb on - strand at 5811.731 kb on - strand at 5811.890 kb on - strand at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.443 kb on - strand, within Pf6N2E2_5036 at 5812.523 kb on + strand, within Pf6N2E2_5036 at 5812.623 kb on + strand, within Pf6N2E2_5036 at 5812.623 kb on + strand, within Pf6N2E2_5036
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 5,810,341 + +1.0 5,810,341 + +0.0 5,810,341 + -0.6 5,810,341 + +1.0 5,810,341 + +1.0 5,810,342 - +1.0 5,810,342 - -0.3 5,810,342 - -0.6 5,810,342 - +0.0 5,810,411 + +1.0 5,810,412 - +1.0 5,810,447 + +0.0 5,810,447 + -0.4 5,810,447 + +1.0 5,810,448 - -0.4 5,810,448 - +1.0 5,810,486 + +0.0 5,810,487 - +0.0 5,810,487 - -0.4 5,810,487 - +0.0 5,810,487 - -1.0 5,810,487 - -0.6 5,810,487 - -0.6 5,810,487 - +0.0 5,810,516 + +0.0 5,810,516 + +1.0 5,810,638 + Pf6N2E2_5034 0.10 +1.0 5,810,691 + Pf6N2E2_5034 0.19 -1.1 5,810,691 + Pf6N2E2_5034 0.19 -1.0 5,810,691 + Pf6N2E2_5034 0.19 -1.2 5,810,692 - Pf6N2E2_5034 0.19 +1.0 5,810,692 - Pf6N2E2_5034 0.19 +1.0 5,810,692 - Pf6N2E2_5034 0.19 -0.6 5,810,692 - Pf6N2E2_5034 0.19 +0.0 5,810,869 + Pf6N2E2_5034 0.47 -1.1 5,810,953 + Pf6N2E2_5034 0.61 +1.0 5,810,953 + Pf6N2E2_5034 0.61 +1.0 5,810,954 - Pf6N2E2_5034 0.61 -1.0 5,810,971 + Pf6N2E2_5034 0.63 -2.0 5,810,971 + Pf6N2E2_5034 0.63 -0.1 5,810,971 + Pf6N2E2_5034 0.63 +1.0 5,811,031 - Pf6N2E2_5034 0.73 +1.0 5,811,041 + Pf6N2E2_5034 0.75 +1.0 5,811,092 - Pf6N2E2_5034 0.83 -0.6 5,811,238 + +1.0 5,811,239 - +0.0 5,811,276 - -1.0 5,811,281 - +0.0 5,811,295 + Pf6N2E2_5035 0.11 -2.1 5,811,296 - Pf6N2E2_5035 0.11 +0.0 5,811,296 - Pf6N2E2_5035 0.11 -0.6 5,811,296 - Pf6N2E2_5035 0.11 +1.0 5,811,296 - Pf6N2E2_5035 0.11 +1.0 5,811,296 - Pf6N2E2_5035 0.11 +0.4 5,811,296 - Pf6N2E2_5035 0.11 +0.0 5,811,296 - Pf6N2E2_5035 0.11 +1.0 5,811,301 + Pf6N2E2_5035 0.12 +0.0 5,811,302 - Pf6N2E2_5035 0.12 +1.0 5,811,340 + Pf6N2E2_5035 0.20 +1.0 5,811,340 + Pf6N2E2_5035 0.20 -1.0 5,811,340 + Pf6N2E2_5035 0.20 +1.0 5,811,340 + Pf6N2E2_5035 0.20 +1.0 5,811,341 - Pf6N2E2_5035 0.20 -0.6 5,811,391 + Pf6N2E2_5035 0.30 +0.0 5,811,445 + Pf6N2E2_5035 0.41 +1.0 5,811,446 - Pf6N2E2_5035 0.41 +1.0 5,811,448 + Pf6N2E2_5035 0.42 -1.0 5,811,448 + Pf6N2E2_5035 0.42 +0.0 5,811,448 + Pf6N2E2_5035 0.42 +0.0 5,811,448 + Pf6N2E2_5035 0.42 -0.6 5,811,448 + Pf6N2E2_5035 0.42 +0.0 5,811,448 + Pf6N2E2_5035 0.42 +0.0 5,811,448 + Pf6N2E2_5035 0.42 -0.5 5,811,448 + Pf6N2E2_5035 0.42 +1.0 5,811,448 + Pf6N2E2_5035 0.42 -0.4 5,811,448 + Pf6N2E2_5035 0.42 -1.6 5,811,448 + Pf6N2E2_5035 0.42 +0.0 5,811,448 + Pf6N2E2_5035 0.42 +0.0 5,811,448 + Pf6N2E2_5035 0.42 -1.0 5,811,449 - Pf6N2E2_5035 0.42 +0.0 5,811,449 - Pf6N2E2_5035 0.42 +1.0 5,811,449 - Pf6N2E2_5035 0.42 -0.6 5,811,449 - Pf6N2E2_5035 0.42 +0.0 5,811,449 - Pf6N2E2_5035 0.42 -0.6 5,811,449 - Pf6N2E2_5035 0.42 +1.0 5,811,449 - Pf6N2E2_5035 0.42 +0.0 5,811,449 - Pf6N2E2_5035 0.42 +1.0 5,811,449 - Pf6N2E2_5035 0.42 +1.0 5,811,449 - Pf6N2E2_5035 0.42 -1.0 5,811,449 - Pf6N2E2_5035 0.42 +0.0 5,811,449 - Pf6N2E2_5035 0.42 +0.0 5,811,449 - Pf6N2E2_5035 0.42 +0.0 5,811,449 - Pf6N2E2_5035 0.42 -1.0 5,811,454 + Pf6N2E2_5035 0.43 +1.0 5,811,454 + Pf6N2E2_5035 0.43 +0.0 5,811,454 + Pf6N2E2_5035 0.43 +0.0 5,811,454 + Pf6N2E2_5035 0.43 +0.0 5,811,455 - Pf6N2E2_5035 0.43 -1.5 5,811,455 - Pf6N2E2_5035 0.43 +0.0 5,811,455 - Pf6N2E2_5035 0.43 +0.0 5,811,455 - Pf6N2E2_5035 0.43 +1.0 5,811,475 + Pf6N2E2_5035 0.47 +1.0 5,811,475 + Pf6N2E2_5035 0.47 -0.8 5,811,475 + Pf6N2E2_5035 0.47 +0.0 5,811,475 + Pf6N2E2_5035 0.47 +0.0 5,811,476 - Pf6N2E2_5035 0.47 +1.0 5,811,476 - Pf6N2E2_5035 0.47 -1.0 5,811,476 - Pf6N2E2_5035 0.47 +0.0 5,811,643 + Pf6N2E2_5035 0.81 -0.6 5,811,643 + Pf6N2E2_5035 0.81 -1.0 5,811,643 + Pf6N2E2_5035 0.81 +0.0 5,811,643 + Pf6N2E2_5035 0.81 -1.8 5,811,643 + Pf6N2E2_5035 0.81 +1.0 5,811,643 + Pf6N2E2_5035 0.81 +0.0 5,811,643 + Pf6N2E2_5035 0.81 +1.0 5,811,644 - Pf6N2E2_5035 0.81 +1.0 5,811,644 - Pf6N2E2_5035 0.81 -2.1 5,811,644 - Pf6N2E2_5035 0.81 -0.6 5,811,644 - Pf6N2E2_5035 0.81 -0.6 5,811,644 - Pf6N2E2_5035 0.81 +1.0 5,811,644 - Pf6N2E2_5035 0.81 -1.3 5,811,644 - Pf6N2E2_5035 0.81 +0.0 5,811,650 - Pf6N2E2_5035 0.83 +0.0 5,811,679 + Pf6N2E2_5035 0.88 +1.0 5,811,730 + +1.0 5,811,730 + +1.0 5,811,730 + +1.0 5,811,731 - -1.1 5,811,731 - -0.6 5,811,731 - -0.6 5,811,890 - +1.0 5,812,242 + Pf6N2E2_5036 0.36 -0.6 5,812,242 + Pf6N2E2_5036 0.36 -0.5 5,812,242 + Pf6N2E2_5036 0.36 -0.6 5,812,242 + Pf6N2E2_5036 0.36 -0.6 5,812,242 + Pf6N2E2_5036 0.36 +0.4 5,812,243 - Pf6N2E2_5036 0.36 +1.0 5,812,243 - Pf6N2E2_5036 0.36 +1.0 5,812,243 - Pf6N2E2_5036 0.36 -0.9 5,812,243 - Pf6N2E2_5036 0.36 +0.0 5,812,243 - Pf6N2E2_5036 0.36 +1.0 5,812,442 + Pf6N2E2_5036 0.58 -0.6 5,812,442 + Pf6N2E2_5036 0.58 +0.0 5,812,442 + Pf6N2E2_5036 0.58 -0.6 5,812,442 + Pf6N2E2_5036 0.58 +1.0 5,812,442 + Pf6N2E2_5036 0.58 -0.7 5,812,443 - Pf6N2E2_5036 0.59 +0.0 5,812,523 + Pf6N2E2_5036 0.67 -0.9 5,812,623 + Pf6N2E2_5036 0.79 -0.6 5,812,623 + Pf6N2E2_5036 0.79 +0.2
Or see this region's nucleotide sequence