Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_497 and Pf6N2E2_498 are separated by 183 nucleotides Pf6N2E2_498 and Pf6N2E2_499 are separated by 608 nucleotides
Pf6N2E2_497 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 564,022 to 565,389
_497
Pf6N2E2_498 - Dihydropyrimidinase (EC 3.5.2.2) <small>(from data)</small>, at 565,573 to 567,012
_498
Pf6N2E2_499 - Possible pyrimidine permease in reductive pathway, at 567,621 to 569,099
_499
Position (kb) 565
566
567
568 Strain fitness (log2 ratio) -1
0
1 at 564.617 kb on + strand, within Pf6N2E2_497 at 564.617 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.833 kb on + strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 565.028 kb on + strand, within Pf6N2E2_497 at 565.197 kb on + strand, within Pf6N2E2_497 at 565.198 kb on - strand, within Pf6N2E2_497 at 565.256 kb on + strand at 565.262 kb on + strand at 565.262 kb on + strand at 565.656 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.684 kb on + strand at 565.684 kb on + strand at 566.224 kb on + strand, within Pf6N2E2_498 at 566.224 kb on + strand, within Pf6N2E2_498 at 566.234 kb on + strand, within Pf6N2E2_498 at 566.262 kb on - strand, within Pf6N2E2_498 at 566.306 kb on + strand, within Pf6N2E2_498 at 566.549 kb on + strand, within Pf6N2E2_498 at 566.549 kb on + strand, within Pf6N2E2_498 at 566.829 kb on + strand, within Pf6N2E2_498 at 566.829 kb on + strand, within Pf6N2E2_498 at 566.829 kb on + strand, within Pf6N2E2_498 at 566.830 kb on - strand, within Pf6N2E2_498 at 566.830 kb on - strand, within Pf6N2E2_498 at 566.864 kb on + strand, within Pf6N2E2_498 at 566.864 kb on + strand, within Pf6N2E2_498 at 566.864 kb on + strand, within Pf6N2E2_498 at 566.865 kb on - strand, within Pf6N2E2_498 at 566.979 kb on + strand at 567.061 kb on + strand at 567.062 kb on - strand at 567.077 kb on + strand at 567.095 kb on + strand at 567.096 kb on - strand at 567.181 kb on - strand at 567.288 kb on + strand at 567.392 kb on - strand at 567.406 kb on + strand at 567.473 kb on + strand at 567.473 kb on + strand at 567.475 kb on + strand at 567.567 kb on + strand at 567.567 kb on + strand at 567.701 kb on + strand at 567.701 kb on + strand at 567.701 kb on + strand at 567.702 kb on - strand at 567.798 kb on + strand, within Pf6N2E2_499 at 567.798 kb on + strand, within Pf6N2E2_499 at 567.799 kb on - strand, within Pf6N2E2_499 at 567.799 kb on - strand, within Pf6N2E2_499
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 564,617 + Pf6N2E2_497 0.43 +0.9 564,617 + Pf6N2E2_497 0.43 +0.9 564,815 + Pf6N2E2_497 0.58 -0.1 564,815 + Pf6N2E2_497 0.58 -1.1 564,833 + Pf6N2E2_497 0.59 +1.1 564,834 - Pf6N2E2_497 0.59 -0.9 564,834 - Pf6N2E2_497 0.59 +0.9 564,834 - Pf6N2E2_497 0.59 -0.1 565,028 + Pf6N2E2_497 0.74 +0.9 565,197 + Pf6N2E2_497 0.86 -0.1 565,198 - Pf6N2E2_497 0.86 +0.9 565,256 + -0.1 565,262 + +0.9 565,262 + +0.3 565,656 + -1.1 565,658 + -0.1 565,658 + -1.4 565,658 + +0.3 565,658 + +0.9 565,684 + +1.1 565,684 + -0.1 566,224 + Pf6N2E2_498 0.45 -1.4 566,224 + Pf6N2E2_498 0.45 +0.9 566,234 + Pf6N2E2_498 0.46 -0.1 566,262 - Pf6N2E2_498 0.48 -0.4 566,306 + Pf6N2E2_498 0.51 -0.7 566,549 + Pf6N2E2_498 0.68 -0.1 566,549 + Pf6N2E2_498 0.68 -0.7 566,829 + Pf6N2E2_498 0.87 +0.9 566,829 + Pf6N2E2_498 0.87 -1.4 566,829 + Pf6N2E2_498 0.87 -0.9 566,830 - Pf6N2E2_498 0.87 +0.9 566,830 - Pf6N2E2_498 0.87 -1.1 566,864 + Pf6N2E2_498 0.90 -0.1 566,864 + Pf6N2E2_498 0.90 +0.9 566,864 + Pf6N2E2_498 0.90 +0.9 566,865 - Pf6N2E2_498 0.90 -0.7 566,979 + -0.1 567,061 + +0.9 567,062 - +0.9 567,077 + -0.1 567,095 + +0.9 567,096 - +0.9 567,181 - +0.9 567,288 + +0.9 567,392 - -1.4 567,406 + -0.1 567,473 + -0.1 567,473 + -0.7 567,475 + -0.5 567,567 + +0.9 567,567 + +0.9 567,701 + +0.9 567,701 + +0.9 567,701 + -0.1 567,702 - +0.9 567,798 + Pf6N2E2_499 0.12 +0.9 567,798 + Pf6N2E2_499 0.12 +0.9 567,799 - Pf6N2E2_499 0.12 -0.9 567,799 - Pf6N2E2_499 0.12 +0.9
Or see this region's nucleotide sequence