Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4680 and Pf6N2E2_4681 are separated by 512 nucleotides Pf6N2E2_4681 and Pf6N2E2_4682 overlap by 4 nucleotides Pf6N2E2_4682 and Pf6N2E2_4683 are separated by 71 nucleotides
Pf6N2E2_4680 - HTH-type transcriptional regulator BetI, at 5,413,766 to 5,414,386
_4680
Pf6N2E2_4681 - ABC transporter for Carnitine, ATPase component <small>(from data)</small>, at 5,414,899 to 5,416,077
_4681
Pf6N2E2_4682 - ABC transporter for Carnitine, permease component <small>(from data)</small>, at 5,416,074 to 5,416,919
_4682
Pf6N2E2_4683 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 5,416,991 to 5,417,938
_4683
Position (kb) 5414
5415
5416
5417 Strain fitness (log2 ratio) -2
-1
0
1 at 5413.986 kb on + strand, within Pf6N2E2_4680 at 5413.987 kb on - strand, within Pf6N2E2_4680 at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.388 kb on + strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.389 kb on - strand at 5414.401 kb on + strand at 5414.402 kb on - strand at 5414.448 kb on + strand at 5414.449 kb on - strand at 5414.491 kb on + strand at 5414.491 kb on + strand at 5414.529 kb on + strand at 5414.529 kb on + strand at 5414.529 kb on + strand at 5414.530 kb on - strand at 5414.530 kb on - strand at 5414.594 kb on + strand at 5414.594 kb on + strand at 5414.594 kb on + strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.595 kb on - strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.596 kb on + strand at 5414.597 kb on - strand at 5414.597 kb on - strand at 5414.597 kb on - strand at 5414.623 kb on - strand at 5414.636 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.645 kb on - strand at 5414.665 kb on + strand at 5414.665 kb on + strand at 5414.666 kb on - strand at 5414.788 kb on + strand at 5414.788 kb on + strand at 5414.789 kb on - strand at 5414.789 kb on - strand at 5414.789 kb on - strand at 5414.789 kb on - strand at 5414.811 kb on - strand at 5414.818 kb on - strand at 5414.818 kb on - strand at 5414.824 kb on + strand at 5414.824 kb on + strand at 5414.825 kb on - strand at 5414.825 kb on - strand at 5414.900 kb on + strand at 5414.901 kb on - strand at 5414.930 kb on + strand at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.290 kb on + strand, within Pf6N2E2_4681 at 5415.291 kb on - strand, within Pf6N2E2_4681 at 5415.291 kb on - strand, within Pf6N2E2_4681 at 5415.291 kb on - strand, within Pf6N2E2_4681 at 5415.332 kb on + strand, within Pf6N2E2_4681 at 5415.333 kb on - strand, within Pf6N2E2_4681 at 5415.883 kb on - strand, within Pf6N2E2_4681 at 5415.883 kb on - strand, within Pf6N2E2_4681 at 5416.044 kb on + strand at 5416.044 kb on + strand at 5416.044 kb on + strand at 5416.045 kb on - strand at 5416.045 kb on - strand at 5416.089 kb on + strand at 5416.089 kb on + strand at 5416.094 kb on + strand at 5416.094 kb on + strand at 5416.095 kb on - strand at 5416.140 kb on + strand at 5416.140 kb on + strand at 5416.140 kb on + strand at 5416.140 kb on + strand at 5416.141 kb on - strand at 5416.141 kb on - strand at 5416.281 kb on - strand, within Pf6N2E2_4682 at 5416.402 kb on + strand, within Pf6N2E2_4682 at 5416.402 kb on + strand, within Pf6N2E2_4682 at 5416.403 kb on - strand, within Pf6N2E2_4682 at 5416.499 kb on - strand, within Pf6N2E2_4682 at 5416.499 kb on - strand, within Pf6N2E2_4682 at 5416.552 kb on + strand, within Pf6N2E2_4682 at 5416.553 kb on - strand, within Pf6N2E2_4682 at 5416.553 kb on - strand, within Pf6N2E2_4682 at 5416.603 kb on - strand, within Pf6N2E2_4682 at 5416.701 kb on + strand, within Pf6N2E2_4682 at 5416.886 kb on - strand at 5416.899 kb on + strand at 5416.900 kb on - strand at 5416.913 kb on + strand at 5416.913 kb on + strand at 5416.913 kb on + strand at 5416.914 kb on - strand at 5416.914 kb on - strand at 5416.914 kb on - strand at 5416.914 kb on - strand at 5416.922 kb on + strand at 5416.922 kb on + strand at 5416.922 kb on + strand at 5416.947 kb on + strand at 5416.947 kb on + strand at 5416.947 kb on + strand at 5416.948 kb on - strand at 5416.948 kb on - strand at 5416.979 kb on + strand at 5416.979 kb on + strand at 5416.979 kb on + strand at 5416.979 kb on + strand at 5416.979 kb on + strand at 5416.979 kb on + strand at 5416.979 kb on + strand at 5416.980 kb on - strand at 5416.980 kb on - strand at 5416.980 kb on - strand at 5416.980 kb on - strand at 5416.980 kb on - strand at 5416.992 kb on + strand at 5416.992 kb on + strand at 5416.992 kb on + strand at 5417.033 kb on - strand at 5417.065 kb on + strand at 5417.072 kb on + strand at 5417.073 kb on - strand at 5417.073 kb on - strand at 5417.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 5,413,986 + Pf6N2E2_4680 0.35 +0.5 5,413,987 - Pf6N2E2_4680 0.36 -1.0 5,414,388 + -0.5 5,414,388 + -1.0 5,414,388 + +1.0 5,414,388 + +0.0 5,414,388 + +1.0 5,414,388 + +1.0 5,414,388 + +1.0 5,414,389 - -1.5 5,414,389 - -0.5 5,414,389 - -0.5 5,414,389 - -1.0 5,414,389 - +0.0 5,414,389 - +0.0 5,414,389 - +1.0 5,414,389 - +1.0 5,414,389 - -1.0 5,414,389 - -0.5 5,414,389 - -0.5 5,414,401 + -0.5 5,414,402 - -0.5 5,414,448 + +1.0 5,414,449 - -1.1 5,414,491 + +1.0 5,414,491 + -0.5 5,414,529 + -1.2 5,414,529 + +1.0 5,414,529 + -0.5 5,414,530 - +1.0 5,414,530 - +0.0 5,414,594 + -1.0 5,414,594 + -0.5 5,414,594 + -0.5 5,414,595 - +0.0 5,414,595 - -2.1 5,414,595 - +0.0 5,414,595 - -0.8 5,414,595 - +1.0 5,414,596 + +1.0 5,414,596 + +1.0 5,414,596 + +1.0 5,414,596 + -1.0 5,414,596 + -1.0 5,414,596 + +1.0 5,414,596 + +1.0 5,414,596 + -0.9 5,414,597 - +1.0 5,414,597 - +0.0 5,414,597 - +1.0 5,414,623 - +0.3 5,414,636 - +1.0 5,414,645 - +1.0 5,414,645 - +1.0 5,414,645 - -0.5 5,414,645 - -0.5 5,414,665 + +1.0 5,414,665 + +0.0 5,414,666 - -0.7 5,414,788 + -1.3 5,414,788 + +0.0 5,414,789 - +0.0 5,414,789 - +0.0 5,414,789 - -1.0 5,414,789 - +0.0 5,414,811 - -0.1 5,414,818 - -0.5 5,414,818 - +0.0 5,414,824 + -0.5 5,414,824 + +1.0 5,414,825 - +0.0 5,414,825 - -0.1 5,414,900 + +0.0 5,414,901 - -0.5 5,414,930 + -0.5 5,415,290 + Pf6N2E2_4681 0.33 -0.5 5,415,290 + Pf6N2E2_4681 0.33 -0.6 5,415,290 + Pf6N2E2_4681 0.33 +0.0 5,415,290 + Pf6N2E2_4681 0.33 -1.8 5,415,290 + Pf6N2E2_4681 0.33 -0.5 5,415,290 + Pf6N2E2_4681 0.33 -0.5 5,415,290 + Pf6N2E2_4681 0.33 -2.5 5,415,290 + Pf6N2E2_4681 0.33 +0.0 5,415,291 - Pf6N2E2_4681 0.33 +0.0 5,415,291 - Pf6N2E2_4681 0.33 +1.0 5,415,291 - Pf6N2E2_4681 0.33 -0.5 5,415,332 + Pf6N2E2_4681 0.37 +1.0 5,415,333 - Pf6N2E2_4681 0.37 -1.5 5,415,883 - Pf6N2E2_4681 0.83 +1.0 5,415,883 - Pf6N2E2_4681 0.83 +1.0 5,416,044 + +1.0 5,416,044 + +1.0 5,416,044 + +1.0 5,416,045 - +1.0 5,416,045 - +1.0 5,416,089 + -0.3 5,416,089 + -1.2 5,416,094 + -0.9 5,416,094 + -0.5 5,416,095 - +1.0 5,416,140 + -1.3 5,416,140 + -0.5 5,416,140 + -1.0 5,416,140 + +0.0 5,416,141 - +1.0 5,416,141 - +1.0 5,416,281 - Pf6N2E2_4682 0.24 -0.5 5,416,402 + Pf6N2E2_4682 0.39 +1.0 5,416,402 + Pf6N2E2_4682 0.39 +1.0 5,416,403 - Pf6N2E2_4682 0.39 -1.0 5,416,499 - Pf6N2E2_4682 0.50 +0.0 5,416,499 - Pf6N2E2_4682 0.50 -1.4 5,416,552 + Pf6N2E2_4682 0.57 +1.0 5,416,553 - Pf6N2E2_4682 0.57 +1.0 5,416,553 - Pf6N2E2_4682 0.57 -1.0 5,416,603 - Pf6N2E2_4682 0.63 +0.0 5,416,701 + Pf6N2E2_4682 0.74 +0.0 5,416,886 - -2.0 5,416,899 + +0.0 5,416,900 - +1.0 5,416,913 + +1.0 5,416,913 + +0.6 5,416,913 + +1.0 5,416,914 - -0.5 5,416,914 - +1.0 5,416,914 - +0.0 5,416,914 - +0.0 5,416,922 + +0.0 5,416,922 + +0.0 5,416,922 + +1.0 5,416,947 + +1.0 5,416,947 + +1.0 5,416,947 + +1.0 5,416,948 - -1.3 5,416,948 - -1.4 5,416,979 + -1.0 5,416,979 + -0.6 5,416,979 + -0.5 5,416,979 + +1.0 5,416,979 + -1.4 5,416,979 + +0.0 5,416,979 + +0.0 5,416,980 - -1.1 5,416,980 - +0.5 5,416,980 - -1.1 5,416,980 - +1.0 5,416,980 - +0.6 5,416,992 + +0.0 5,416,992 + +1.0 5,416,992 + +0.0 5,417,033 - -2.1 5,417,065 + -0.5 5,417,072 + +1.0 5,417,073 - +1.0 5,417,073 - +1.0 5,417,073 - +1.0
Or see this region's nucleotide sequence