Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3727 and Pf6N2E2_3728 overlap by 4 nucleotides Pf6N2E2_3728 and Pf6N2E2_3729 overlap by 1 nucleotides Pf6N2E2_3729 and Pf6N2E2_3730 are separated by 42 nucleotides Pf6N2E2_3730 and Pf6N2E2_3731 are separated by 75 nucleotides
Pf6N2E2_3727 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60), at 4,340,935 to 4,341,402
_3727
Pf6N2E2_3728 - 3-oxoacyl-[ACP] reductase (EC 1.1.1.100), at 4,341,399 to 4,342,127
_3728
Pf6N2E2_3729 - FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41), at 4,342,127 to 4,343,353
_3729
Pf6N2E2_3730 - Excinuclease ATPase subunit, at 4,343,396 to 4,343,842
_3730
Pf6N2E2_3731 - hypothetical protein, at 4,343,918 to 4,344,439
_3731
Position (kb)
4342
4343
4344 Strain fitness (log2 ratio)
-1
0
1 at 4341.338 kb on + strand, within Pf6N2E2_3727 at 4341.339 kb on - strand, within Pf6N2E2_3727 at 4341.339 kb on - strand, within Pf6N2E2_3727 at 4341.364 kb on + strand at 4341.639 kb on + strand, within Pf6N2E2_3728 at 4341.639 kb on + strand, within Pf6N2E2_3728 at 4341.640 kb on - strand, within Pf6N2E2_3728 at 4341.640 kb on - strand, within Pf6N2E2_3728 at 4341.640 kb on - strand, within Pf6N2E2_3728 at 4341.643 kb on - strand, within Pf6N2E2_3728 at 4341.744 kb on + strand, within Pf6N2E2_3728 at 4341.745 kb on - strand, within Pf6N2E2_3728 at 4341.745 kb on - strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4342.083 kb on + strand at 4342.084 kb on - strand at 4342.529 kb on + strand, within Pf6N2E2_3729 at 4342.649 kb on + strand, within Pf6N2E2_3729 at 4342.650 kb on - strand, within Pf6N2E2_3729 at 4342.742 kb on + strand, within Pf6N2E2_3729 at 4343.016 kb on - strand, within Pf6N2E2_3729 at 4343.016 kb on - strand, within Pf6N2E2_3729 at 4343.016 kb on - strand, within Pf6N2E2_3729 at 4343.195 kb on + strand, within Pf6N2E2_3729 at 4343.196 kb on - strand, within Pf6N2E2_3729 at 4343.249 kb on + strand at 4343.250 kb on - strand at 4343.285 kb on + strand at 4343.286 kb on - strand at 4343.549 kb on + strand, within Pf6N2E2_3730 at 4343.549 kb on + strand, within Pf6N2E2_3730 at 4343.550 kb on - strand, within Pf6N2E2_3730 at 4343.563 kb on + strand, within Pf6N2E2_3730 at 4343.741 kb on + strand, within Pf6N2E2_3730 at 4343.742 kb on - strand, within Pf6N2E2_3730 at 4343.742 kb on - strand, within Pf6N2E2_3730 at 4343.742 kb on - strand, within Pf6N2E2_3730 at 4343.774 kb on + strand, within Pf6N2E2_3730 at 4343.774 kb on + strand, within Pf6N2E2_3730 at 4343.774 kb on + strand, within Pf6N2E2_3730 at 4343.774 kb on + strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.775 kb on - strand, within Pf6N2E2_3730 at 4343.840 kb on + strand at 4343.841 kb on - strand at 4343.906 kb on + strand at 4343.906 kb on + strand at 4343.906 kb on + strand at 4343.906 kb on + strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.907 kb on - strand at 4343.913 kb on + strand at 4343.913 kb on + strand at 4343.913 kb on + strand at 4343.914 kb on - strand at 4343.914 kb on - strand at 4343.914 kb on - strand at 4343.955 kb on + strand at 4343.955 kb on + strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4343.956 kb on - strand at 4344.046 kb on + strand, within Pf6N2E2_3731 at 4344.047 kb on - strand, within Pf6N2E2_3731 at 4344.151 kb on - strand, within Pf6N2E2_3731 at 4344.151 kb on - strand, within Pf6N2E2_3731 at 4344.151 kb on - strand, within Pf6N2E2_3731 at 4344.182 kb on + strand, within Pf6N2E2_3731 at 4344.248 kb on - strand, within Pf6N2E2_3731 at 4344.280 kb on - strand, within Pf6N2E2_3731 at 4344.328 kb on + strand, within Pf6N2E2_3731 at 4344.328 kb on + strand, within Pf6N2E2_3731 at 4344.329 kb on - strand, within Pf6N2E2_3731
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 4,341,338 + Pf6N2E2_3727 0.86 -1.1 4,341,339 - Pf6N2E2_3727 0.86 -0.9 4,341,339 - Pf6N2E2_3727 0.86 +0.1 4,341,364 + -1.3 4,341,639 + Pf6N2E2_3728 0.33 +0.1 4,341,639 + Pf6N2E2_3728 0.33 +1.1 4,341,640 - Pf6N2E2_3728 0.33 +0.1 4,341,640 - Pf6N2E2_3728 0.33 +1.1 4,341,640 - Pf6N2E2_3728 0.33 -0.5 4,341,643 - Pf6N2E2_3728 0.33 -0.3 4,341,744 + Pf6N2E2_3728 0.47 -0.9 4,341,745 - Pf6N2E2_3728 0.47 -1.2 4,341,745 - Pf6N2E2_3728 0.47 -0.0 4,341,855 + Pf6N2E2_3728 0.63 -1.2 4,341,855 + Pf6N2E2_3728 0.63 -1.5 4,341,855 + Pf6N2E2_3728 0.63 +1.1 4,341,855 + Pf6N2E2_3728 0.63 +1.1 4,341,855 + Pf6N2E2_3728 0.63 -0.5 4,341,856 - Pf6N2E2_3728 0.63 -0.6 4,341,856 - Pf6N2E2_3728 0.63 -0.9 4,341,856 - Pf6N2E2_3728 0.63 +0.1 4,341,856 - Pf6N2E2_3728 0.63 +0.1 4,341,856 - Pf6N2E2_3728 0.63 +0.1 4,341,856 - Pf6N2E2_3728 0.63 +0.1 4,342,083 + +0.1 4,342,084 - +1.7 4,342,529 + Pf6N2E2_3729 0.33 +1.1 4,342,649 + Pf6N2E2_3729 0.43 +0.1 4,342,650 - Pf6N2E2_3729 0.43 +0.1 4,342,742 + Pf6N2E2_3729 0.50 +0.1 4,343,016 - Pf6N2E2_3729 0.72 -1.5 4,343,016 - Pf6N2E2_3729 0.72 +0.1 4,343,016 - Pf6N2E2_3729 0.72 +0.1 4,343,195 + Pf6N2E2_3729 0.87 -0.5 4,343,196 - Pf6N2E2_3729 0.87 -1.6 4,343,249 + +1.1 4,343,250 - -0.8 4,343,285 + -0.2 4,343,286 - +1.1 4,343,549 + Pf6N2E2_3730 0.34 +0.1 4,343,549 + Pf6N2E2_3730 0.34 -0.3 4,343,550 - Pf6N2E2_3730 0.34 -0.6 4,343,563 + Pf6N2E2_3730 0.37 +0.1 4,343,741 + Pf6N2E2_3730 0.77 +1.1 4,343,742 - Pf6N2E2_3730 0.77 -0.1 4,343,742 - Pf6N2E2_3730 0.77 -0.7 4,343,742 - Pf6N2E2_3730 0.77 +1.1 4,343,774 + Pf6N2E2_3730 0.85 +0.1 4,343,774 + Pf6N2E2_3730 0.85 +0.1 4,343,774 + Pf6N2E2_3730 0.85 +1.1 4,343,774 + Pf6N2E2_3730 0.85 +1.1 4,343,775 - Pf6N2E2_3730 0.85 -0.5 4,343,775 - Pf6N2E2_3730 0.85 +1.1 4,343,775 - Pf6N2E2_3730 0.85 -0.7 4,343,775 - Pf6N2E2_3730 0.85 +0.1 4,343,775 - Pf6N2E2_3730 0.85 +1.1 4,343,775 - Pf6N2E2_3730 0.85 +0.1 4,343,775 - Pf6N2E2_3730 0.85 +1.1 4,343,775 - Pf6N2E2_3730 0.85 -0.3 4,343,775 - Pf6N2E2_3730 0.85 +1.1 4,343,840 + +1.1 4,343,841 - -1.5 4,343,906 + -1.2 4,343,906 + +1.1 4,343,906 + +0.1 4,343,906 + -0.7 4,343,907 - -1.3 4,343,907 - -1.3 4,343,907 - -0.5 4,343,907 - -0.5 4,343,907 - +1.1 4,343,907 - +1.1 4,343,907 - +0.1 4,343,907 - -1.3 4,343,913 + +1.1 4,343,913 + +0.1 4,343,913 + +1.1 4,343,914 - +1.1 4,343,914 - -0.4 4,343,914 - +1.1 4,343,955 + +1.1 4,343,955 + +0.1 4,343,956 - +1.1 4,343,956 - +0.1 4,343,956 - +0.1 4,343,956 - +0.8 4,343,956 - +0.1 4,343,956 - +1.1 4,343,956 - +1.1 4,343,956 - +1.1 4,343,956 - -0.5 4,344,046 + Pf6N2E2_3731 0.25 +1.1 4,344,047 - Pf6N2E2_3731 0.25 -1.3 4,344,151 - Pf6N2E2_3731 0.45 +1.1 4,344,151 - Pf6N2E2_3731 0.45 +0.1 4,344,151 - Pf6N2E2_3731 0.45 +1.7 4,344,182 + Pf6N2E2_3731 0.51 +1.1 4,344,248 - Pf6N2E2_3731 0.63 +0.1 4,344,280 - Pf6N2E2_3731 0.69 +0.1 4,344,328 + Pf6N2E2_3731 0.79 -1.3 4,344,328 + Pf6N2E2_3731 0.79 -1.3 4,344,329 - Pf6N2E2_3731 0.79 +1.1
Or see this region's nucleotide sequence