Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1345

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,580,169	+				+0.9
1,580,199	+				+0.9
1,580,200	-				+0.9
1,580,200	-				-0.3
1,580,200	-				+0.9
1,580,453	+		Pf6N2E2_1344	0.25	+0.9
1,580,453	+		Pf6N2E2_1344	0.25	+0.9
1,580,453	+		Pf6N2E2_1344	0.25	+0.9
1,580,453	+		Pf6N2E2_1344	0.25	-0.1
1,580,453	+		Pf6N2E2_1344	0.25	-1.1
1,580,453	+		Pf6N2E2_1344	0.25	-1.7
1,580,454	-		Pf6N2E2_1344	0.25	+0.9
1,580,506	-		Pf6N2E2_1344	0.31	+0.2
1,580,550	+		Pf6N2E2_1344	0.36	-1.3
1,580,651	+		Pf6N2E2_1344	0.48	+0.9
1,580,709	-		Pf6N2E2_1344	0.55	+0.9
1,580,709	-		Pf6N2E2_1344	0.55	+0.9
1,580,753	+		Pf6N2E2_1344	0.60	-0.1
1,580,753	+		Pf6N2E2_1344	0.60	-0.1
1,580,753	+		Pf6N2E2_1344	0.60	+0.9
1,580,753	+		Pf6N2E2_1344	0.60	-1.4
1,580,754	-		Pf6N2E2_1344	0.60	-0.1
1,580,793	-		Pf6N2E2_1344	0.65	+0.9
1,580,794	+		Pf6N2E2_1344	0.65	+0.9
1,580,794	+		Pf6N2E2_1344	0.65	+0.9
1,580,795	-		Pf6N2E2_1344	0.65	+0.9
1,580,987	+		Pf6N2E2_1344	0.88	+0.9
1,580,987	+		Pf6N2E2_1344	0.88	+0.9
1,580,987	+		Pf6N2E2_1344	0.88	-0.1
1,580,991	-		Pf6N2E2_1344	0.89	+0.9
1,580,991	-		Pf6N2E2_1344	0.89	-0.1
1,581,107	-				-0.3
1,581,126	-				+0.9
1,581,126	-				+0.9
1,581,275	+		Pf6N2E2_1345	0.13	+0.9
1,581,276	-		Pf6N2E2_1345	0.13	-1.1
1,581,279	-		Pf6N2E2_1345	0.13	-0.7
1,581,539	+		Pf6N2E2_1345	0.37	-1.9
1,581,539	+		Pf6N2E2_1345	0.37	-1.3
1,581,540	-		Pf6N2E2_1345	0.37	-1.9
1,581,564	-		Pf6N2E2_1345	0.40	-0.1
1,581,564	-		Pf6N2E2_1345	0.40	-0.7
1,581,686	+		Pf6N2E2_1345	0.51	+0.9
1,581,848	+		Pf6N2E2_1345	0.66	+0.9
1,581,849	-		Pf6N2E2_1345	0.66	+0.9
1,581,927	-		Pf6N2E2_1345	0.73	+0.9
1,581,927	-		Pf6N2E2_1345	0.73	+0.9
1,581,998	+		Pf6N2E2_1345	0.80	-1.1
1,581,999	-		Pf6N2E2_1345	0.80	-0.1
1,582,066	-		Pf6N2E2_1345	0.86	-0.7
1,582,066	-		Pf6N2E2_1345	0.86	+0.9
1,582,160	+				+0.9
1,582,160	+				+0.9
1,582,161	-				-0.1
1,582,161	-				+0.9
1,582,181	+				+0.1
1,582,181	+				+0.9
1,582,183	+				-0.1
1,582,183	+				-1.3
1,582,184	-				+0.9
1,582,184	-				-0.1
1,582,190	+				+0.9
1,582,256	+				+1.9
1,582,265	+				+0.9
1,582,265	+				-0.1
1,582,269	+				-0.1
1,582,269	+				-0.9
1,582,271	+				+0.9
1,582,304	+				-0.7
1,582,304	+				+0.9
1,582,305	-				-0.1
1,582,305	-				-2.0
1,582,356	+				-1.1
1,582,357	-				-0.1
1,582,357	-				+0.9
1,582,439	+		Pf6N2E2_1346	0.18	+0.9
1,582,439	+		Pf6N2E2_1346	0.18	+0.9
1,582,439	+		Pf6N2E2_1346	0.18	+0.9
1,582,439	+		Pf6N2E2_1346	0.18	+0.9
1,582,452	+		Pf6N2E2_1346	0.22	-0.6
1,582,452	+		Pf6N2E2_1346	0.22	+0.9
1,582,453	-		Pf6N2E2_1346	0.22	-0.1
1,582,453	-		Pf6N2E2_1346	0.22	-1.4
1,582,453	-		Pf6N2E2_1346	0.22	-0.1
1,582,505	+		Pf6N2E2_1346	0.34	-0.1
1,582,520	+		Pf6N2E2_1346	0.38	-0.1
1,582,521	-		Pf6N2E2_1346	0.38	+0.9
1,582,521	-		Pf6N2E2_1346	0.38	-0.1
1,582,521	-		Pf6N2E2_1346	0.38	+0.9
1,582,544	+		Pf6N2E2_1346	0.43	-1.4
1,582,586	+		Pf6N2E2_1346	0.53	+0.9
1,582,587	-		Pf6N2E2_1346	0.53	-0.7
1,582,587	-		Pf6N2E2_1346	0.53	-0.5
1,582,661	+		Pf6N2E2_1346	0.71	+0.9
1,582,661	+		Pf6N2E2_1346	0.71	+0.9
1,582,662	-		Pf6N2E2_1346	0.71	-0.7
1,582,686	-		Pf6N2E2_1346	0.77	-0.1
1,582,725	-		Pf6N2E2_1346	0.86	-0.1
1,583,107	-		Pf6N2E2_1347	0.43	+0.9
1,583,107	-		Pf6N2E2_1347	0.43	-0.1