Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5179

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
5,966,615	+				-0.6
5,966,616	-				+1.0
5,966,685	+				+1.0
5,966,686	-				+1.0
5,966,686	-				-0.6
5,966,818	-		Pf6N2E2_5178	0.15	+2.6
5,967,140	-		Pf6N2E2_5178	0.53	+0.0
5,967,143	+		Pf6N2E2_5178	0.53	-1.4
5,967,144	-		Pf6N2E2_5178	0.53	+1.0
5,967,279	-		Pf6N2E2_5178	0.69	+1.0
5,967,362	+		Pf6N2E2_5178	0.79	+1.0
5,967,512	+				+1.0
5,967,513	-				-0.6
5,967,548	+				+1.0
5,967,548	+				+1.0
5,967,548	+				+1.0
5,967,565	+				+1.0
5,967,577	+				-2.3
5,967,577	+				-0.9
5,967,577	+				+1.0
5,967,577	+				-0.6
5,967,599	+				+1.0
5,967,631	+				-1.1
5,967,631	+				-1.3
5,967,632	-				-0.6
5,967,677	+				+0.0
5,967,677	+				+1.0
5,967,678	-				-1.0
5,967,678	-				-0.9
5,967,678	-				+1.0
5,967,678	-				+1.0
5,967,678	-				-1.1
5,967,682	-				+1.0
5,967,682	-				-0.8
5,967,682	-				+0.0
5,967,890	+		Pf6N2E2_5179	0.27	-0.6
5,967,890	+		Pf6N2E2_5179	0.27	+1.0
5,967,891	-		Pf6N2E2_5179	0.27	-2.3
5,967,891	-		Pf6N2E2_5179	0.27	+0.0
5,967,891	-		Pf6N2E2_5179	0.27	+0.0
5,967,891	-		Pf6N2E2_5179	0.27	+1.0
5,967,902	+		Pf6N2E2_5179	0.28	+0.0
5,967,902	+		Pf6N2E2_5179	0.28	+9.8
5,967,903	-		Pf6N2E2_5179	0.29	+1.0
5,967,903	-		Pf6N2E2_5179	0.29	-0.9
5,967,903	-		Pf6N2E2_5179	0.29	+0.0
5,967,903	-		Pf6N2E2_5179	0.29	-0.6
5,968,034	+		Pf6N2E2_5179	0.41	+0.0
5,968,034	+		Pf6N2E2_5179	0.41	+2.0
5,968,051	+		Pf6N2E2_5179	0.43	+1.0
5,968,051	+		Pf6N2E2_5179	0.43	+1.0
5,968,051	+		Pf6N2E2_5179	0.43	+1.0
5,968,051	+		Pf6N2E2_5179	0.43	+0.2
5,968,052	-		Pf6N2E2_5179	0.43	+0.0
5,968,052	-		Pf6N2E2_5179	0.43	+0.0
5,968,052	-		Pf6N2E2_5179	0.43	-1.0
5,968,055	+		Pf6N2E2_5179	0.43	+0.0
5,968,056	-		Pf6N2E2_5179	0.44	-1.5
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+1.0
5,968,157	+		Pf6N2E2_5179	0.54	+0.0
5,968,158	-		Pf6N2E2_5179	0.54	+1.0
5,968,158	-		Pf6N2E2_5179	0.54	+1.0
5,968,158	-		Pf6N2E2_5179	0.54	-1.5
5,968,158	-		Pf6N2E2_5179	0.54	+1.0
5,968,235	+		Pf6N2E2_5179	0.61	+1.0
5,968,236	-		Pf6N2E2_5179	0.61	+0.0
5,968,236	-		Pf6N2E2_5179	0.61	+0.0
5,968,298	+		Pf6N2E2_5179	0.67	-0.4
5,968,299	-		Pf6N2E2_5179	0.68	-0.5
5,968,299	-		Pf6N2E2_5179	0.68	+0.7
5,968,358	+		Pf6N2E2_5179	0.73	+0.8
5,968,390	+		Pf6N2E2_5179	0.77	-0.6
5,968,448	+		Pf6N2E2_5179	0.82	+0.0
5,968,552	+				-0.2
5,968,552	+				+1.0
5,968,571	+				-0.2
5,968,571	+				-0.6
5,968,593	+				-0.8
5,968,593	+				+1.0
5,968,593	+				-0.8
5,968,593	+				+0.0
5,968,593	+				-1.0
5,968,593	+				-0.8
5,968,593	+				-0.8
5,968,593	+				+1.0
5,968,593	+				+0.0
5,968,593	+				-0.6
5,968,593	+				-0.6
5,968,593	+				+0.0
5,968,593	+				+0.0
5,968,594	-				+1.0
5,968,594	-				+0.0
5,968,594	-				-0.6
5,968,594	-				-1.0
5,968,594	-				+0.0
5,968,595	+				-0.8
5,968,595	+				+0.7
5,968,595	+				+0.0
5,968,595	+				+0.0
5,968,596	-				-0.7
5,968,596	-				+0.0
5,968,622	+				-0.5
5,968,622	+				+0.0
5,968,622	+				+1.0
5,968,622	+				+1.0
5,968,622	+				-0.8
5,968,623	-				+1.0
5,968,870	+		Pf6N2E2_5180	0.39	+1.0
5,968,870	+		Pf6N2E2_5180	0.39	+1.0
5,968,870	+		Pf6N2E2_5180	0.39	+1.0
5,968,870	+		Pf6N2E2_5180	0.39	-1.7
5,968,870	+		Pf6N2E2_5180	0.39	+1.0
5,968,870	+		Pf6N2E2_5180	0.39	+1.0
5,968,870	+		Pf6N2E2_5180	0.39	+1.0
5,968,871	-		Pf6N2E2_5180	0.39	+0.0
5,968,907	+		Pf6N2E2_5180	0.45	-0.6
5,968,907	+		Pf6N2E2_5180	0.45	+1.0
5,968,957	+		Pf6N2E2_5180	0.53	+1.0
5,968,957	+		Pf6N2E2_5180	0.53	+1.0
5,968,962	+		Pf6N2E2_5180	0.54	+1.0
5,969,020	+		Pf6N2E2_5180	0.63	-1.4
5,969,021	-		Pf6N2E2_5180	0.63	+1.0
5,969,071	+		Pf6N2E2_5180	0.71	-0.6
5,969,072	-		Pf6N2E2_5180	0.72	-1.0
5,969,100	+		Pf6N2E2_5180	0.76	+0.0
5,969,100	+		Pf6N2E2_5180	0.76	+1.0
5,969,100	+		Pf6N2E2_5180	0.76	+0.0
5,969,100	+		Pf6N2E2_5180	0.76	+1.0
5,969,100	+		Pf6N2E2_5180	0.76	+0.0
5,969,100	+		Pf6N2E2_5180	0.76	+0.0
5,969,101	-		Pf6N2E2_5180	0.76	+1.0
5,969,101	-		Pf6N2E2_5180	0.76	+0.0
5,969,101	-		Pf6N2E2_5180	0.76	+1.0
5,969,101	-		Pf6N2E2_5180	0.76	+0.0
5,969,142	-		Pf6N2E2_5180	0.83	+1.3
5,969,143	+		Pf6N2E2_5180	0.83	-1.0
5,969,143	+		Pf6N2E2_5180	0.83	-1.6
5,969,143	+		Pf6N2E2_5180	0.83	-0.6
5,969,143	+		Pf6N2E2_5180	0.83	-0.6
5,969,143	+		Pf6N2E2_5180	0.83	+1.0
5,969,143	+		Pf6N2E2_5180	0.83	-2.3
5,969,143	+		Pf6N2E2_5180	0.83	-0.2
5,969,143	+		Pf6N2E2_5180	0.83	+0.0
5,969,143	+		Pf6N2E2_5180	0.83	+0.0
5,969,144	-		Pf6N2E2_5180	0.83	+1.0
5,969,144	-		Pf6N2E2_5180	0.83	+1.0
5,969,144	-		Pf6N2E2_5180	0.83	+1.0
5,969,151	+		Pf6N2E2_5180	0.84	-0.4
5,969,151	+		Pf6N2E2_5180	0.84	-0.7
5,969,152	-		Pf6N2E2_5180	0.85	+1.0
5,969,153	+		Pf6N2E2_5180	0.85	+0.0
5,969,153	+		Pf6N2E2_5180	0.85	-1.3
5,969,153	+		Pf6N2E2_5180	0.85	+1.0
5,969,153	+		Pf6N2E2_5180	0.85	+1.0
5,969,154	-		Pf6N2E2_5180	0.85	+1.0
5,969,162	+		Pf6N2E2_5180	0.86	+0.0
5,969,162	+		Pf6N2E2_5180	0.86	+1.0
5,969,162	+		Pf6N2E2_5180	0.86	+0.0
5,969,163	-		Pf6N2E2_5180	0.86	-0.6
5,969,174	+		Pf6N2E2_5180	0.88	-0.6
5,969,174	+		Pf6N2E2_5180	0.88	-0.4
5,969,175	-		Pf6N2E2_5180	0.88	+0.0
5,969,175	-		Pf6N2E2_5180	0.88	+1.0
5,969,217	+				+1.0